Gene
RNA
| Item | Value |
|---|---|
| gene id | G100283 |
| gene name | tsc2 |
| gene type | non-coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035908.1 |
| NCBI id | CM008311.1 |
| chromosome length | 31403898 |
| location | 2926659 ~ 2940177 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| symbol | description |
|---|---|
| tsc2 | Predicted to enable GTPase activator activity. Acts upstream of or within intestinal epithelial cell differentiation; negative regulation of TOR signaling; and regulation of action potential firing pattern. Predicted to be located in nucleus. Predicted to be part of TSC1-TSC2 complex. Predicted to be active in cytoplasm. Is expressed in several structures, including brain; cardiovascular system; head; immature eye; and intestine. Used to study anxiety disorder; tuberous sclerosis; and tuberous sclerosis 2. Human ortholog(s) of this gene implicated in hepatic angiomyolipoma; lymphangioleiomyomatosis; medulloblastoma; tuberous sclerosis; and tuberous sclerosis 2. Orthologous to human TSC2 (TSC complex subunit 2). |
| description |
|---|
| PREDICTED: tuberin isoform X4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU135358 | True | 1211 | lncRNA | 0.56 | 7 | 2926659 | 2940177 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| pkd1 | pkd1 | coding | upstream | 10459 | 2775158 ~ 2916200 (+) |
| exosc1 | exosc1,LOC107700859,LOC107598491 | coding | upstream | 407733 | 2508536 ~ 2518926 (+) |
| LOC103022670 | pgam1,LOC108436383,LOC108258456,LOC107729838,LOC107700858,LOC107598490 | coding | upstream | 420279 | 2504485 ~ 2506380 (+) |
| LOC103025604 | LOC108436360,LOC107598482,LOC107700849,LOC107747162 | coding | upstream | 510838 | 2401554 ~ 2415821 (+) |
| khsrp | khsrp | coding | upstream | 536680 | 2369956 ~ 2389979 (+) |
| nthl1 | nthl1 | coding | downstream | 57382 | 2997559 ~ 3004262 (+) |
| slc9a3r2 | slc9a3r2 | coding | downstream | 68684 | 3008861 ~ 3031715 (+) |
| LOC111193603 | NA | coding | downstream | 202873 | 3143050 ~ 3149166 (+) |
| LOC111193604 | NA | coding | downstream | 215041 | 3155218 ~ 3159534 (+) |
| LOC111193506 | NA | coding | downstream | 224469 | 3164646 ~ 3170094 (+) |
| G100281 | NA | non-coding | upstream | 3192 | 2919479 ~ 2923467 (+) |
| G100265 | NA | non-coding | upstream | 9231 | 2916603 ~ 2917428 (+) |
| G100278 | NA | non-coding | upstream | 37244 | 2886353 ~ 2889415 (+) |
| G100277 | NA | non-coding | upstream | 61791 | 2862630 ~ 2864868 (+) |
| G100268 | NA | non-coding | upstream | 140820 | 2785052 ~ 2785839 (+) |
| G100288 | tsc2 | non-coding | downstream | 51241 | 2991418 ~ 2997416 (+) |
| G100305 | NA | non-coding | downstream | 123776 | 3063953 ~ 3125580 (+) |
| G100317 | NA | non-coding | downstream | 242014 | 3182191 ~ 3200431 (+) |
| G100377 | nup133,LOC106564728 | non-coding | downstream | 415401 | 3355578 ~ 3357876 (+) |
| G100387 | NA | non-coding | downstream | 450840 | 3391017 ~ 3394325 (+) |
| tekt4 | LOC108436369 | other | upstream | 276509 | 2642087 ~ 2650150 (+) |
| LOC111193505 | NA | other | upstream | 301154 | 2610517 ~ 2625505 (+) |
| LOC111193601 | NA | other | upstream | 426228 | 2493761 ~ 2500431 (+) |
| avpi1 | NA | other | upstream | 463274 | 2451401 ~ 2463385 (+) |
| LOC103026535 | slc25a23a,LOC103026535,LOC107594260,LOC107703801,LOC107747161,LOC108258471 | other | upstream | 558095 | 2343619 ~ 2368564 (+) |
| G100300 | NA | other | downstream | 104450 | 3044627 ~ 3046637 (+) |
| LOC103046164 | NA | other | downstream | 148476 | 3088653 ~ 3117263 (+) |
| G100314 | NA | other | downstream | 218479 | 3158656 ~ 3209330 (+) |
| LOC103023443 | NA | other | downstream | 286562 | 3226739 ~ 3229366 (+) |
| LOC103022119 | NA | other | downstream | 1071818 | 4011995 ~ 4060749 (+) |
