G100365


Basic Information

Item Value
gene id G100365
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 3424689 ~ 3426907 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU135469
ATTCAAGTTAACGGGGTCTTCAGTTCAATTCCCTATATGGGTCGAGCTTCTGTGTCGTCTTCCAAGGATTCTGGTTTCCTAACAATGTctaaaacatggagatcagttCATTTATCTGGTAAACAGGATAATTTACCAGAAAAATTGAAtactatatgtgtatgtgtgactgtatgcccatatatggattggcactctctCCTGGGTCAACTCCTTAGTGGTGGATatagtcctccaggtggacggtggtttctggttaagagtatgctatacatgattggctgctgcttcttctcATCTCAgcgttttataatttttttttttttaaaatacattaaacatgAACCAAAACGGCTCaagtacttatttaaaaaaaaaatcagtaccgtattttttgcactataaggtgcaccgaattataaggcgcattttatgcgactctagtaaggaacaggggtgtcgccatgttttccttctaattcagcaggtctcactggtGCTGGTGGTAGTTAAGTAGTTAATTTAAAAGTcaggtaaagctaagctaagtaaacaaaactgtaattcttaaataaaaacattttcttttaaagtcaaacaagtgctgaatgttaatctacacagatttatctcctgaaaactgttcatttgggtgagtaaagcacttctgtttataatgcttagatttccagatttattagcattagtggctaaccggttagcagctaatgccctcccccaacagcgctacactgaggaaccctgaatgtTCCGGTAAGCCTGGGTGATGTTAGCTAGCGGTTCTAaatgcgcaggctacagtctgatttaCACACCTCTGTATGGCGAAAGAGCTATTACTTTGcgttgttagcggctaatgctaatactgcttcattCTCGGTgcaggagaactaaactaaaactcctgtataactctgtacttcagcagagtggctttactgctccttaatacctgactggtagaatttatacataaggagcacctgattataaggctcactgacaattttttggataattaaagcattttaaatgcgccttataatgcagaaAATACAGTACTTCAGTGGAAATACAAATGATAAAATTGGTGAAAAATAAGAAccctacactctaagaaattcTACACTAAACTGTTTCTACCCATTAGTTAGGACACTATCACAATGTAAATGCATCTTcttaagctgctgctgatgttatAATCGTATTGTAcagctcaacacgcttggaggagaacactaagtGCCAGTTCTGGTACTTCATTCAGAGAGCAAGGCAAGTAATAGACAGCTGTGGCATCACCAGAACTCCTAAGAATGGAGCAGCACTTAGACAGTTGCACCACCTGAGTATTCAAGGAATCTTCCCCAACATTTGATGGAATGATCCATTGAATATTACATGGTTCACCATTGGTTGAGAATGTAATAGTGATCTATCTAGCCATTCATTAGAAGTCATTTGCTTTATTTTCTCATTAATTGGAAAAAGGTTTTGAACACAGTTGTGGGCGGAGCCTGGTTAGCAGGGCATCGGTTTATACTGGATAAATAGATTTCTCCATTTTCTTCATTGTctatatgttaaaaaataaaactgacaatACATTATGACCACTATGAATGATTGTACTGTATGATAAACTGGACTAATACTGGAATTATTAGTTATTCATTATATCTGTGGTCTGAAAAGCTCCTCTAAAAGCCATATGTGTAGAATCAgctatgtgagtgtgtatatattacaTTAGGCATTGAGTTTTTATAAGgtgtgtaatgcagtacagGTTTAGTAGGAGTGGTGAAAGGGACTGTACAGGTATAttagttcattttattttcaatctagacaaaattattatttcgtgtttattttcttagttattctttattaaaaaaatgtgatttactgtatttttttaacatcttCACTACAAGTACAGTACGCTAGGTTTTCCCTTTTTGACCCTTCAAAAAGCCATGCaaaatcagtaaataaatgcacttttTGTCACTCAGTTTTTGTTTCTGAAGACTGGAAATGAAGAACATGATCAGTAAGCCTTTCTGTAagccttattattatttatgttttttgtgtatatCTGTTCTCAaagcatttcattaaaaaaaatcctgatcTGTTGACCACTCCAATAAAATCAACC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135469 True 2197 lncRNA 0.36 2 3424689 3426907

Neighbor

gene id symbol gene type direction distance location
kif16b kif16b coding upstream 1090 3381880 ~ 3423599 (+)
LOC103037697 LOC108438607 coding upstream 135464 3283758 ~ 3289225 (+)
LOC103032260 NA coding upstream 199177 3211770 ~ 3225512 (+)
LOC107197534 NA coding upstream 215095 3202847 ~ 3209594 (+)
LOC111193606 NA coding upstream 224184 3190082 ~ 3200505 (+)
esf1 esf1,LOC107579043 coding downstream 9825 3436732 ~ 3455661 (+)
LOC103036342 jag1 coding downstream 150274 3577181 ~ 3634221 (+)
LOC103047139 psen2,psn2,LOC108438591,LOC106586215 coding downstream 278778 3705685 ~ 3726805 (+)
spast spast coding downstream 308200 3735107 ~ 3755023 (+)
pus10 pus10 coding downstream 792201 4219108 ~ 4236387 (+)
G100387 NA non-coding upstream 30364 3391017 ~ 3394325 (+)
G100377 nup133,LOC106564728 non-coding upstream 66813 3355578 ~ 3357876 (+)
G100317 NA non-coding upstream 224258 3182191 ~ 3200431 (+)
G100305 NA non-coding upstream 299109 3063953 ~ 3125580 (+)
G100288 tsc2 non-coding upstream 427273 2991418 ~ 2997416 (+)
G100363 btbd3,btbd3a,LOC107583195,LOC107684321,LOC107675618,LOC107594463,LOC107747408 non-coding downstream 9132 3436039 ~ 3463191 (+)
G100390 NA non-coding downstream 22256 3449163 ~ 3515506 (+)
G100393 NA non-coding downstream 43039 3469946 ~ 3470398 (+)
G100647 NA non-coding downstream 124709 3551616 ~ 3552284 (+)
G100665 NA non-coding downstream 214571 3641478 ~ 3682143 (+)
LOC103023443 NA other upstream 195323 3226739 ~ 3229366 (+)
G100314 NA other upstream 215359 3158656 ~ 3209330 (+)
LOC103046164 NA other upstream 307426 3088653 ~ 3117263 (+)
G100300 NA other upstream 378052 3044627 ~ 3046637 (+)
tekt4 LOC108436369 other upstream 774539 2642087 ~ 2650150 (+)
LOC103022119 NA other downstream 585088 4011995 ~ 4060749 (+)
G100820 akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 other downstream 823176 4250083 ~ 4267826 (+)
atg4d atg4d other downstream 1202216 4629123 ~ 4645356 (+)
G100975 NA other downstream 1659853 5086760 ~ 5091748 (+)
G101452 NA other downstream 2855118 6282025 ~ 6407811 (+)

Expression


Co-expression Network