G100377 (nup133,LOC106564728)


Basic Information

Item Value
gene id G100377
gene name nup133,LOC106564728
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 3355578 ~ 3357876 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU135488
ATAGTTTCAGAGCATGTCTTTGATTGACAGAATAAAAGTGAGCACACCACCAATTAATACATGGTAACAGTACCTTCTTGGATGAGTTTCTGGAGGATTTTAACGAATATGCTTTCCTTGGCCGCTTCCAGAGGGTCATCTGTACTGTCTGATGCCGACCAGTTTTCTTTCCAGTCTTTTTTCAGTGCTTTACTGAAGATCTCACGCTTCAGAGCCTCAATATCCACTGCATCTTCCTCATCAATGTACTCCAGCAGATCCAGAGCTTTCTTAAAGTCGTACTCGTTCGCCCCACGGTTATCATCACAAATATACAaATTAATCAGGTTGTGAGCGCTCAGTAAGGGCATGGTGTCGGGGTTCTGTTGTTTTTCCTCCAGCAGCTGTTTGGGTAGAGT

Function

symbol description
nup133 Predicted to be a structural constituent of nuclear pore. Predicted to be involved in poly(A)+ mRNA export from nucleus; protein import into nucleus; and transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery. Predicted to act upstream of or within mRNA transport and protein transport. Predicted to be located in kinetochore and nucleus. Predicted to be part of nuclear pore outer ring. Is expressed in several structures, including heart; integument; liver; nervous system; and pleuroperitoneal region. Used to study Galloway-Mowat syndrome 1. Human ortholog(s) of this gene implicated in Galloway-Mowat syndrome and nephrotic syndrome type 18. Orthologous to human NUP133 (nucleoporin 133).

NR:

description
uncharacterized protein PB18E9.04c-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135488 True 398 lncRNA 0.44 4 3355578 3357876

Neighbor

gene id symbol gene type direction distance location
LOC103037697 LOC108438607 coding upstream 66353 3283758 ~ 3289225 (+)
LOC103032260 NA coding upstream 130066 3211770 ~ 3225512 (+)
LOC107197534 NA coding upstream 145984 3202847 ~ 3209594 (+)
LOC111193606 NA coding upstream 155073 3190082 ~ 3200505 (+)
LOC111193507 NA coding upstream 171266 3183440 ~ 3184312 (+)
kif16b kif16b coding downstream 24004 3381880 ~ 3423599 (+)
esf1 esf1,LOC107579043 coding downstream 78856 3436732 ~ 3455661 (+)
LOC103036342 jag1 coding downstream 219305 3577181 ~ 3634221 (+)
LOC103047139 psen2,psn2,LOC108438591,LOC106586215 coding downstream 347809 3705685 ~ 3726805 (+)
spast spast coding downstream 377231 3735107 ~ 3755023 (+)
G100317 NA non-coding upstream 155147 3182191 ~ 3200431 (+)
G100305 NA non-coding upstream 229998 3063953 ~ 3125580 (+)
G100288 tsc2 non-coding upstream 358162 2991418 ~ 2997416 (+)
G100282 NA non-coding upstream 382074 2918736 ~ 2973504 (+)
G100387 NA non-coding downstream 33141 3391017 ~ 3394325 (+)
G100365 NA non-coding downstream 66813 3424689 ~ 3426907 (+)
G100363 btbd3,btbd3a,LOC107583195,LOC107684321,LOC107675618,LOC107594463,LOC107747408 non-coding downstream 78163 3436039 ~ 3463191 (+)
G100390 NA non-coding downstream 91287 3449163 ~ 3515506 (+)
G100393 NA non-coding downstream 112070 3469946 ~ 3470398 (+)
LOC103023443 NA other upstream 126212 3226739 ~ 3229366 (+)
G100314 NA other upstream 146248 3158656 ~ 3209330 (+)
LOC103046164 NA other upstream 238315 3088653 ~ 3117263 (+)
G100300 NA other upstream 308941 3044627 ~ 3046637 (+)
tekt4 LOC108436369 other upstream 705428 2642087 ~ 2650150 (+)
LOC103022119 NA other downstream 654119 4011995 ~ 4060749 (+)
G100820 akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 other downstream 892207 4250083 ~ 4267826 (+)
atg4d atg4d other downstream 1271247 4629123 ~ 4645356 (+)
G100975 NA other downstream 1728884 5086760 ~ 5091748 (+)
G101452 NA other downstream 2924149 6282025 ~ 6407811 (+)

Expression


Co-expression Network