Gene
RNA
| Item | Value |
|---|---|
| gene id | G100390 |
| gene name | NA |
| gene type | non-coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035908.1 |
| NCBI id | CM008311.1 |
| chromosome length | 31403898 |
| location | 3449163 ~ 3515506 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU135505 | True | 253 | lncRNA | 0.26 | 3 | 3449163 | 3515506 |
| TU135506 | False | 213 | lncRNA | 0.33 | 2 | 3495529 | 3513076 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| kif16b | kif16b | coding | upstream | 25564 | 3381880 ~ 3423599 (+) |
| LOC103037697 | LOC108438607 | coding | upstream | 159938 | 3283758 ~ 3289225 (+) |
| LOC103032260 | NA | coding | upstream | 223651 | 3211770 ~ 3225512 (+) |
| LOC107197534 | NA | coding | upstream | 239569 | 3202847 ~ 3209594 (+) |
| LOC111193606 | NA | coding | upstream | 248658 | 3190082 ~ 3200505 (+) |
| LOC103036342 | jag1 | coding | downstream | 61675 | 3577181 ~ 3634221 (+) |
| LOC103047139 | psen2,psn2,LOC108438591,LOC106586215 | coding | downstream | 190179 | 3705685 ~ 3726805 (+) |
| spast | spast | coding | downstream | 219601 | 3735107 ~ 3755023 (+) |
| pus10 | pus10 | coding | downstream | 703602 | 4219108 ~ 4236387 (+) |
| c12h1orf100 | NA | coding | downstream | 767244 | 4282750 ~ 4288025 (+) |
| G100365 | NA | non-coding | upstream | 22256 | 3424689 ~ 3426907 (+) |
| G100387 | NA | non-coding | upstream | 54838 | 3391017 ~ 3394325 (+) |
| G100377 | nup133,LOC106564728 | non-coding | upstream | 91287 | 3355578 ~ 3357876 (+) |
| G100317 | NA | non-coding | upstream | 248732 | 3182191 ~ 3200431 (+) |
| G100305 | NA | non-coding | upstream | 323583 | 3063953 ~ 3125580 (+) |
| G100647 | NA | non-coding | downstream | 36110 | 3551616 ~ 3552284 (+) |
| G100665 | NA | non-coding | downstream | 125972 | 3641478 ~ 3682143 (+) |
| G100666 | NA | non-coding | downstream | 156540 | 3672046 ~ 3687398 (+) |
| G100668 | NA | non-coding | downstream | 170401 | 3685907 ~ 3809815 (+) |
| G100672 | NA | non-coding | downstream | 181555 | 3697061 ~ 3697384 (+) |
| LOC103023443 | NA | other | upstream | 219797 | 3226739 ~ 3229366 (+) |
| G100314 | NA | other | upstream | 239833 | 3158656 ~ 3209330 (+) |
| LOC103046164 | NA | other | upstream | 331900 | 3088653 ~ 3117263 (+) |
| G100300 | NA | other | upstream | 402526 | 3044627 ~ 3046637 (+) |
| tekt4 | LOC108436369 | other | upstream | 799013 | 2642087 ~ 2650150 (+) |
| LOC103022119 | NA | other | downstream | 496489 | 4011995 ~ 4060749 (+) |
| G100820 | akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 | other | downstream | 734577 | 4250083 ~ 4267826 (+) |
| atg4d | atg4d | other | downstream | 1113617 | 4629123 ~ 4645356 (+) |
| G100975 | NA | other | downstream | 1571254 | 5086760 ~ 5091748 (+) |
| G101452 | NA | other | downstream | 2766519 | 6282025 ~ 6407811 (+) |
