G100666


Basic Information

Item Value
gene id G100666
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 3672046 ~ 3687398 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU135935
ctcctggtgcaaaaattcaagcagttcagtttggtttgatggcttgtgaaactcatcatttttgagtgctctcttatttatttttttattttaaagtcttaagtcattatacatccacacaggtctCATATATTCAGGTGTAAAGCAACTCCAGTAATGAAAGCAGTTAGAGTTCATGTAAATttggatgtaatcagtagtgaAGAGTGAACAGCAGTCTGAGGCATGTTGAGTAAACTGGATGATGATCAGATGATCTGTGGTGGCTGATGGGGAGATGGGGAGGCTGACTTCCAGAAACTTCCATCCGTGAGatcctgagggtccaacatccatcagtatcgggtcagacaggtgggcagtcagcaACACTGACAATAATAACTAATCACATATTAATGGTTTTACCAGATGCTTCCTGGAGTCTAGTACATGATTCTTCATTACAATAGAGAAGGAAATTAGAaaaatggttcttctatggcatcgtTTAAAGGAGTAAACTGACATTTTCCGGTGTAAAATgggcttttgttgtagtaaatcatgataaaaagttcttatctttgatgaatagcaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135935 True 581 lncRNA 0.38 2 3672046 3687398

Neighbor

gene id symbol gene type direction distance location
LOC103036342 jag1 coding upstream 37825 3577181 ~ 3634221 (+)
esf1 esf1,LOC107579043 coding upstream 216385 3436732 ~ 3455661 (+)
kif16b kif16b coding upstream 248447 3381880 ~ 3423599 (+)
LOC103037697 LOC108438607 coding upstream 382821 3283758 ~ 3289225 (+)
LOC103032260 NA coding upstream 446534 3211770 ~ 3225512 (+)
LOC103047139 psen2,psn2,LOC108438591,LOC106586215 coding downstream 18287 3705685 ~ 3726805 (+)
spast spast coding downstream 47709 3735107 ~ 3755023 (+)
pus10 pus10 coding downstream 531710 4219108 ~ 4236387 (+)
c12h1orf100 NA coding downstream 595352 4282750 ~ 4288025 (+)
LOC103041106 NA coding downstream 700758 4388156 ~ 4421174 (+)
G100647 NA non-coding upstream 119762 3551616 ~ 3552284 (+)
G100390 NA non-coding upstream 156540 3449163 ~ 3515506 (+)
G100393 NA non-coding upstream 201648 3469946 ~ 3470398 (+)
G100363 btbd3,btbd3a,LOC107583195,LOC107684321,LOC107675618,LOC107594463,LOC107747408 non-coding upstream 208855 3436039 ~ 3463191 (+)
G100365 NA non-coding upstream 245139 3424689 ~ 3426907 (+)
G100672 NA non-coding downstream 9663 3697061 ~ 3697384 (+)
G100676 NA non-coding downstream 41180 3728578 ~ 3733517 (+)
G100678 NA non-coding downstream 78454 3765852 ~ 3795171 (+)
G100685 ugp2a,LOC108258649,LOC105909394 non-coding downstream 79981 3767379 ~ 3769837 (+)
G100681 NA non-coding downstream 109886 3797284 ~ 3798208 (+)
LOC103023443 NA other upstream 442680 3226739 ~ 3229366 (+)
G100314 NA other upstream 462716 3158656 ~ 3209330 (+)
LOC103046164 NA other upstream 554783 3088653 ~ 3117263 (+)
G100300 NA other upstream 625409 3044627 ~ 3046637 (+)
tekt4 LOC108436369 other upstream 1021896 2642087 ~ 2650150 (+)
LOC103022119 NA other downstream 324597 4011995 ~ 4060749 (+)
G100820 akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 other downstream 562685 4250083 ~ 4267826 (+)
atg4d atg4d other downstream 941725 4629123 ~ 4645356 (+)
G100975 NA other downstream 1399362 5086760 ~ 5091748 (+)
G101452 NA other downstream 2594627 6282025 ~ 6407811 (+)

Expression


Co-expression Network