G100836


Basic Information

Item Value
gene id G100836
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 4361043 ~ 4362401 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU136202
TAGCTAGGCTTTTTAATAGGAGACAACAGCAGGGAAGTGGGTTAACAGGGCCGTTAATGCTTCTTTTTAAAACGATTGATGCAatcatataaatcatataaagcactggatatttttttacaatgtttatttataaatgtatttgatgattaaaggaaaaagaaaatccCCTATGTTTTTGCAAGCCCATCATTCCAGTCCTAGTACTATTTGATGACAAAACCCTCAGTTTAGAGCAAAAACCTCAGTTttatctcatttttaactattttaacagTATTAACAGTGTATCTGGCTTGAGGAGAAAACTGAGTCAGTATTTAGTAATGAATAGACCAAAAAACACATTGactttcatatacagctctggaaaaaattaagagaccatttaaaaattacgagtttttttttattttaccaaattgaaaacctctggaatataatcaagagaaagaactgcttgattttttacaccaggagtgattagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaaactgtgattacaaaccaaccagggttattccaccaaatattgatttctaaactttgaacctgtttttgcattatttgaggtctgaaagctctgcatatttgttttttgttatttcagccatttctcattttctgcaaataaatgctctaaatgacattactttatttgtaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttcattttattcaaacataaacctataaatagcaaaatcagagaaactgattcagaaactgaagtgtctcttaatttttttaaagctgtataaTACCACATATGTCCGAATGTTTGTGGACTATTCTATTGAATGCATCATCCCACGTTTGCACAAGTTGCACCAATTGCTGAAACAGatgtgcaaaacacacacacttacagagcGTACCCAGTCCTTAGTAGAGGAGTAGAATATGTTGCCAATAGAAAAGGACCACCAGTCGTGGGCTACAGCTGTATAAAGCCCAGAATGATgcaatgatggagctccatccaatacattCGAATGGGATGAGTGATCAAATCCTCAGtctttggacagtagagacagttactccaacaaaagcaggataaactctttttaaatactcttgatttcagaTAAAATTCAGATTAATGAGCAGGTataccaatacttttgtccatatagtgcatATGATATACAGCAAGATACAGAAATATAGACACCAACATACAGGTGCAGCTcaacaaattagaatatcattaaaaagttgctttatttcagtaattcagttcagaatgggaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136202 True 1359 lncRNA 0.33 1 4361043 4362401

Neighbor

gene id symbol gene type direction distance location
c12h1orf100 NA coding upstream 73018 4282750 ~ 4288025 (+)
pus10 pus10 coding upstream 124656 4219108 ~ 4236387 (+)
spast spast coding upstream 606020 3735107 ~ 3755023 (+)
LOC103047139 psen2,psn2,LOC108438591,LOC106586215 coding upstream 634238 3705685 ~ 3726805 (+)
LOC103036342 jag1 coding upstream 726822 3577181 ~ 3634221 (+)
LOC103041106 NA coding downstream 25755 4388156 ~ 4421174 (+)
LOC103024921 LOC108441252,LOC108258536 coding downstream 145233 4507634 ~ 4624848 (+)
LOC103025559 actr2,LOC108423375,LOC108441254,LOC104930021,LOC106585927,LOC107583198 coding downstream 286046 4648447 ~ 4671336 (+)
LOC103042234 meis1,LOC107757034 coding downstream 368228 4730629 ~ 4786885 (+)
LOC103026170 NA coding downstream 433853 4796254 ~ 4804547 (+)
G100834 NA non-coding upstream 13275 4347552 ~ 4347768 (+)
G100832 NA non-coding upstream 17305 4343370 ~ 4343738 (+)
G100831 NA non-coding upstream 27277 4333495 ~ 4333766 (+)
G100829 NA non-coding upstream 31965 4323773 ~ 4329078 (+)
G100821 NA non-coding upstream 76903 4265500 ~ 4284140 (+)
G100837 NA non-coding downstream 201 4362602 ~ 4363005 (+)
G100865 NA non-coding downstream 7754 4370155 ~ 4370521 (+)
G100867 NA non-coding downstream 13641 4376042 ~ 4376329 (+)
G100863 NA non-coding downstream 60472 4422873 ~ 4479103 (+)
G100886 capn9,LOC105893837,LOC104957033 non-coding downstream 91057 4453458 ~ 4457230 (+)
G100820 akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 other upstream 93217 4250083 ~ 4267826 (+)
LOC103022119 NA other upstream 300294 4011995 ~ 4060749 (+)
LOC103023443 NA other upstream 1131677 3226739 ~ 3229366 (+)
G100314 NA other upstream 1151713 3158656 ~ 3209330 (+)
LOC103046164 NA other upstream 1243780 3088653 ~ 3117263 (+)
atg4d atg4d other downstream 266722 4629123 ~ 4645356 (+)
G100975 NA other downstream 724359 5086760 ~ 5091748 (+)
G101452 NA other downstream 1919624 6282025 ~ 6407811 (+)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 1937713 6300114 ~ 6302702 (+)
LOC103032856 march9,LOC108435943 other downstream 2592918 6955319 ~ 6997446 (+)

Expression


Co-expression Network