G100956


Basic Information

Item Value
gene id G100956
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 4972964 ~ 5028408 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU136363
TTCCAGTAAACCACATTACCTGTCTGGTTGAACTGTTCAGTAGCCGACTGTAAACCGAGGGTAGAAACATATCTGTTGTGGTCAGTCCATTGATAAATAATTTTCCATTGTTCTTTCCCTGCAGTGGTGTTGATCCAATCAGGACAGGGCATTTTGGATTTTAAACTGCTGTCATGATGGTAGAGAGTGACATCATTCAGAACTCTCCTTTCTGAAAATTCAGGCAGTCCAAGTCCTTTAGAGACCATATAGTAGGCACAGCTGTCGTACCGAAGatctgtaaatatacagtaaacagTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136363 True 300 lncRNA 0.41 2 4972964 5028408

Neighbor

gene id symbol gene type direction distance location
LOC103026170 NA coding upstream 168417 4796254 ~ 4804547 (+)
LOC103042234 meis1,LOC107757034 coding upstream 186079 4730629 ~ 4786885 (+)
LOC103025559 actr2,LOC108423375,LOC108441254,LOC104930021,LOC106585927,LOC107583198 coding upstream 301628 4648447 ~ 4671336 (+)
LOC103024921 LOC108441252,LOC108258536 coding upstream 348116 4507634 ~ 4624848 (+)
LOC103041106 NA coding upstream 551790 4388156 ~ 4421174 (+)
rad23a rad23a coding downstream 32127 5060535 ~ 5071142 (+)
LOC103031288 NA coding downstream 426284 5454692 ~ 5457457 (+)
rnaseh2a rnaseh2a,LOC107747423 coding downstream 449127 5477535 ~ 5486445 (+)
snrpb2 snrpb2,LOC107684252,LOC107676294 coding downstream 459054 5487462 ~ 5493881 (+)
LOC103027484 LOC108441199,LOC108258526 coding downstream 489665 5518073 ~ 5527443 (+)
G100933 NA non-coding upstream 31795 4861646 ~ 4941169 (+)
G100930 NA non-coding upstream 32813 4844062 ~ 4940151 (+)
G100871 NA non-coding upstream 149064 4816513 ~ 4823900 (+)
G100921 NA non-coding upstream 196897 4775745 ~ 4776067 (+)
G100915 spred2a,spred2,LOC108441255,LOC107594440,LOC107675542,LOC107747416,LOC107757033 non-coding upstream 250654 4700989 ~ 4722310 (+)
G100973 NA non-coding downstream 5242 5033650 ~ 5081681 (+)
G100984 NA non-coding downstream 29524 5057932 ~ 5059876 (+)
G100974 NA non-coding downstream 53359 5081767 ~ 5083805 (+)
G101007 NA non-coding downstream 145535 5173943 ~ 5177140 (+)
G101020 NA non-coding downstream 248856 5277264 ~ 5277491 (+)
atg4d atg4d other upstream 327608 4629123 ~ 4645356 (+)
G100820 akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 other upstream 705138 4250083 ~ 4267826 (+)
LOC103022119 NA other upstream 912215 4011995 ~ 4060749 (+)
LOC103023443 NA other upstream 1743598 3226739 ~ 3229366 (+)
G100314 NA other upstream 1763634 3158656 ~ 3209330 (+)
G100975 NA other downstream 58352 5086760 ~ 5091748 (+)
G101452 NA other downstream 1253617 6282025 ~ 6407811 (+)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 1271706 6300114 ~ 6302702 (+)
LOC103032856 march9,LOC108435943 other downstream 1926911 6955319 ~ 6997446 (+)
G101622 zc3h13 other downstream 2116394 7144802 ~ 7146340 (+)

Expression


Co-expression Network