G100962


Basic Information

Item Value
gene id G100962
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 4996838 ~ 5025487 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU136370
AATTTGTAGTAGGTCCAGAAACCAATCCCAGTCACcaacaagcaaacaaaacagACAAGAGACGTCCAAATAGCAATCCAGATGTGATTCTTCACacctaaatacaaaatacacattacTGTTATTAGTTCAGAGCTTGCTTTTAACAGTAATCACGcattataaacagtttatttaatttaattgaagcTCAGCTCTGATGGATTATGAAGCAGATGAAGATAATGGAACCCCAGACTGTGGTGATGTTGTTGGGTACGCTGATATGCAGAACTACACAGCTGTAGGTGTGTTTTCCTACATCCTCCTCTGGAACTATCACACTCTTTCTGGTCTGGTAGGTTCCGTCGTCGTTGGGCAGAGCCTCAGTGACCCCTTTAACTACAGGCTGAAGATCTGAACCGAGCCAGATCACCTGAACCTCCCGGGGGTAAAACCCCGTCACATGACACGTGACTGTAACAGAGTCTGTCCTCTTCTTCTCAATGATCCGAACTTCTGGAACTTTTTTTAATGTTGACTCTTGGAGCTTCCTTTAAAATCTGCAGTCGTTCCAGACAGGTTTTTTTGTAGAGTGTTGCTATCTCTTCCATATTGGCTGGATCCTTCTCCCGCAGAGTCTTGTACAGGACAGCTTGAGGAACTGCAGCTACAAACGTCTTGGTCTGAAAGTCGAAACTTGCGAAGTCTTTGCCGTTGAATGCGTGGGCCAGCAATGTCCTGTACGTCCCATTCGGATACAGAGAGCAGCAGCCAAATGCTTGGTATATGTTACCATCAGTCAGT
>TU136371
tGTTGCTTTGTCTTGCACTGTTTTTTGAATGATGTTCTCTTCCCTGGTttctgtttttgccttttttagtTTGAGTGACAAAGTAAATTTGCAGATGCATTTTAACACCCGTTACCATTTACTGCCTTTATTGTTGCAGCTTCACAAACAACCTTTAAAtataagtcaatgtaaaatccATCTTTGGAATGTTTCTGACCTTTTTTAATGTTGACTCTTGGAGCTTCCTTTAAAATCTGCAGTCGTTCCAGACAGGTTTTTTTGTAGAGTGTTGCTATCTCTTCCATATTGGCTGGATCCTTCTCCCGCAGAGTCTTGTACAGGACAGCTTGAGGAACTGCAGCTACAAACGTCTTGGTCTGAAAGTCGAAACTTGCGAAGTCTTTGCCGTTGAATGCGTGGGCCAGCAATGTCCTGTACGTCCCATTCGGATACAGAGAGCAGCAGCCAAATGCTTGGTATATGTTACCATCAGTCAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136370 True 786 lncRNA 0.44 3 4996838 5025487
TU136371 False 480 lncRNA 0.41 2 5024868 5025487

Neighbor

gene id symbol gene type direction distance location
LOC103026170 NA coding upstream 192291 4796254 ~ 4804547 (+)
LOC103042234 meis1,LOC107757034 coding upstream 209953 4730629 ~ 4786885 (+)
LOC103025559 actr2,LOC108423375,LOC108441254,LOC104930021,LOC106585927,LOC107583198 coding upstream 325502 4648447 ~ 4671336 (+)
LOC103024921 LOC108441252,LOC108258536 coding upstream 371990 4507634 ~ 4624848 (+)
LOC103041106 NA coding upstream 575664 4388156 ~ 4421174 (+)
rad23a rad23a coding downstream 35048 5060535 ~ 5071142 (+)
LOC103031288 NA coding downstream 429205 5454692 ~ 5457457 (+)
rnaseh2a rnaseh2a,LOC107747423 coding downstream 452048 5477535 ~ 5486445 (+)
snrpb2 snrpb2,LOC107684252,LOC107676294 coding downstream 461975 5487462 ~ 5493881 (+)
LOC103027484 LOC108441199,LOC108258526 coding downstream 492586 5518073 ~ 5527443 (+)
G100958 NA non-coding upstream 5844 4988872 ~ 4990994 (+)
G100938 NA non-coding upstream 15490 4970910 ~ 4981348 (+)
G100933 NA non-coding upstream 55669 4861646 ~ 4941169 (+)
G100930 NA non-coding upstream 56687 4844062 ~ 4940151 (+)
G100871 NA non-coding upstream 172938 4816513 ~ 4823900 (+)
G100973 NA non-coding downstream 8163 5033650 ~ 5081681 (+)
G100984 NA non-coding downstream 32445 5057932 ~ 5059876 (+)
G100974 NA non-coding downstream 56280 5081767 ~ 5083805 (+)
G101007 NA non-coding downstream 148456 5173943 ~ 5177140 (+)
G101020 NA non-coding downstream 251777 5277264 ~ 5277491 (+)
atg4d atg4d other upstream 351482 4629123 ~ 4645356 (+)
G100820 akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 other upstream 729012 4250083 ~ 4267826 (+)
LOC103022119 NA other upstream 936089 4011995 ~ 4060749 (+)
LOC103023443 NA other upstream 1767472 3226739 ~ 3229366 (+)
G100314 NA other upstream 1787508 3158656 ~ 3209330 (+)
G100975 NA other downstream 61273 5086760 ~ 5091748 (+)
G101452 NA other downstream 1256538 6282025 ~ 6407811 (+)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 1274627 6300114 ~ 6302702 (+)
LOC103032856 march9,LOC108435943 other downstream 1929832 6955319 ~ 6997446 (+)
G101622 zc3h13 other downstream 2119315 7144802 ~ 7146340 (+)

Expression


Co-expression Network