G100974


Basic Information

Item Value
gene id G100974
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 5081767 ~ 5083805 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU136386
GAGAAATTGGAGAGTAATTGTGGAATTACTGAAAAGAAATTGGGGGAAAACTGGGAAGAAATTAGGAAGAAACTGAAGAGAAATTAGAGAATTTAGAGGAATTTTATGGGACATTAGGAATGAATTTGGgaagaaaattaaaagaaactaggggaaaaaattgagagaaactgaagttaaattaaaatgaaacttGGGAGAAATTGAGGAAAAATTGGAGAGCCATTAGGGACAAAATTAAGAGGGTAGCAAATTgggaaaaatagagagaaacagGGAATTGAGGAGAAATTGGGAAGTGATTTTCAAGAAATTGTAaagaaatttggaagaaattttGAATAAATTAAAGAGAATTTAGAGATAAATTAGGGAAAGGTTGgggaacaataaaagaaatttgAGAGTAATTGTGAAATAACTGAAaggaatttgggggaaaaaagggGAAGACATTTTTAGAGGAATTTTAGAGGAATTTAATGGGCAGTTGGGGATAAATTTGGGAAGAAACTGGGGGAAAATTAGCAAGAAATTGGGGGGAAATTATGAAGAAGAGAAACAAGGGGAGTTAAGGAAAAATTGGGAagaaatttggaagaaattagAGAGAATTTTGAGATAAATTAGGGAAAGGTTGGAAAAcagaagaaattaaaaagtttTGTGGAATAACTGAACAGAAATTGGTGAAAAACTGGGAAGACATTTGGAAAAAACTGAGGAGAATTTAGGGATACGTTGTGGAGAAGCTGGAGAGAAATTTATTGGGTAATTAGGGATAAATTTGGGGAGAAACTGTGGAGGTTGGTACAGGACGGGgtgaaaagataaaaagatggaCGACTCCTCATATAACGCAAAaattgagagagaaaggagggaaagagagcAAGACACTGTGGAAACACAGAAAGaagcagaatattttttttgtctttgattattttttttccagtattgaACAATAAAAAGAACTAAATCACATCCATTTCCTGtattactatatactatatatatacggCTTCGAAAAGCTTGAAAAAAAGGGACgaggaaaaaatgaaggtctttttttgttgtttttaagaaCTGGGACTTTCCATGTTTTACAAGATGGAGTCTGTGAACAAAAGGCACTTTGAAGGGAACAACCTTTAAATGCTTGCTTACTACTAAACACTACGCCACGAGCACTATGAGGGGTCATTTACAGGGGGGTGGGTGGGCTTCACTTCGTATGAGCCGGGGGATTCGGGGACGGACCGCCTGGTCTGAGAGTCATTTTTCAACATGATTCGCTCTCCATGACTCGTGACTCGTGACTCGTGATTCGCTTTCGTCCGCAAACCCATCTGCACTGAGAAGAACTGCCTACAAACTCTACAAAAACTTCTACCAAGCAAATACTGAGCTCCAGTTAACACATCTCACACTTCATCATGACCAAGGCAACAACTAAACACCTTTTCTTTCAGTTATACTGTAGGTATAAACGCGACTATTCACTTTTGACGCATCACATCTCCAGTTTTAAAGTGAATCTGTGGTGTAAATGagataaaaatggaaaatatggACATTTATGAAGCTGAAAAGTGGTCAAATCTCTATATCATCCATTCTGTTGACCTCATTTTatatgaggatttcattttatatttttaaatatatatattttcttaaaggTTGAATAAAATGCCTTTTGTCACAACCTAGAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136386 True 1719 lncRNA 0.36 2 5081767 5083805

Neighbor

gene id symbol gene type direction distance location
rad23a rad23a coding upstream 10625 5060535 ~ 5071142 (+)
LOC103026170 NA coding upstream 277220 4796254 ~ 4804547 (+)
LOC103042234 meis1,LOC107757034 coding upstream 294882 4730629 ~ 4786885 (+)
LOC103025559 actr2,LOC108423375,LOC108441254,LOC104930021,LOC106585927,LOC107583198 coding upstream 410431 4648447 ~ 4671336 (+)
LOC103024921 LOC108441252,LOC108258536 coding upstream 456919 4507634 ~ 4624848 (+)
LOC103031288 NA coding downstream 370887 5454692 ~ 5457457 (+)
rnaseh2a rnaseh2a,LOC107747423 coding downstream 393730 5477535 ~ 5486445 (+)
snrpb2 snrpb2,LOC107684252,LOC107676294 coding downstream 403657 5487462 ~ 5493881 (+)
LOC103027484 LOC108441199,LOC108258526 coding downstream 434268 5518073 ~ 5527443 (+)
fbxo48 fbxo48,LOC107684254 coding downstream 503484 5587289 ~ 5590899 (+)
G100973 NA non-coding upstream 86 5033650 ~ 5081681 (+)
G100984 NA non-coding upstream 21891 5057932 ~ 5059876 (+)
G100956 NA non-coding upstream 53359 4972964 ~ 5028408 (+)
G100962 NA non-coding upstream 56280 4996838 ~ 5025487 (+)
G100958 NA non-coding upstream 90773 4988872 ~ 4990994 (+)
G101007 NA non-coding downstream 90138 5173943 ~ 5177140 (+)
G101020 NA non-coding downstream 193459 5277264 ~ 5277491 (+)
G101167 NA non-coding downstream 195222 5279027 ~ 5283843 (+)
G101186 NA non-coding downstream 280061 5363866 ~ 5364347 (+)
G101207 NA non-coding downstream 382145 5465950 ~ 5466415 (+)
atg4d atg4d other upstream 436411 4629123 ~ 4645356 (+)
G100820 akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 other upstream 813941 4250083 ~ 4267826 (+)
LOC103022119 NA other upstream 1021018 4011995 ~ 4060749 (+)
LOC103023443 NA other upstream 1852401 3226739 ~ 3229366 (+)
G100314 NA other upstream 1872437 3158656 ~ 3209330 (+)
G100975 NA other downstream 2955 5086760 ~ 5091748 (+)
G101452 NA other downstream 1198220 6282025 ~ 6407811 (+)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 1216309 6300114 ~ 6302702 (+)
LOC103032856 march9,LOC108435943 other downstream 1871514 6955319 ~ 6997446 (+)
G101622 zc3h13 other downstream 2060997 7144802 ~ 7146340 (+)

Expression


Co-expression Network