G100984


Basic Information

Item Value
gene id G100984
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 5057932 ~ 5059876 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU136401
tgaccagtacatgttttgaatggTTAAATACGTGTGTTATTCGATTAAGAgttgaaaaaaagatttaaaaaaataagttaagtggatatataatgataacagaataaaatgataaaatcacTAATCACACTGAAGCTTTTTCCACACCTTACACATCACACACTGTACTAAACTCACTTACATGTCTACGTGCTTTACGTGATTTATCCAGCTTATCTTATCTACAGAGAGCTGGAGAAGCTgattaatgtaataaatcatCTAAAAATTCTCTTATAAAGGTGATCCAGTTGCTCAGATCTCAGTTTTTGGGGTGTTTAATGTTAGAAAAGTGTGATACTGAGATTAATGAGTTTAAGAGCTGGAAGTTGAGTtgtgtagtggataacactgTTACCTGGTAGGGTGGTGGAGGCTCCCCGGGAAGACTGGCCCCTTCAGACTCGTTGAGGAGAGACAGGTCGTCTGCACCTTGCGAGGAGAGACAGTTCCCCATTTAAAGatataaaactgaataattttACACTGAATAATCCGGTATCcgcgctgtctgtctgtcagtccgCTGCGCTCAGTCTCTCTCGGGCTGCTGATaatcagagaaaaacacacacagcgctGAATTTCAGAATAAAACAGCGGAAATATCGCCGCTCTCTCCGGGATTAAAGTCCCCCGGCCTGCCCTGAGCTCCGCAGATGAGTTCCCCGGGCCTGCGGGCCGCTGTCCGCCGCGCTACAGCCGCTTTATCCCGCTGCAGAATATTTTTAGGTGAGACCTCTCGACTCCATCTCTCCTTTCGCTGTGTTTACAAACTGCTGGAGCggaagtagcagcagcagcagcgttttcagctgcattctggGCCAGCGGGGGGCAGCAGCGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136401 True 887 lncRNA 0.45 3 5057932 5059876

Neighbor

gene id symbol gene type direction distance location
LOC103026170 NA coding upstream 253385 4796254 ~ 4804547 (+)
LOC103042234 meis1,LOC107757034 coding upstream 271047 4730629 ~ 4786885 (+)
LOC103025559 actr2,LOC108423375,LOC108441254,LOC104930021,LOC106585927,LOC107583198 coding upstream 386596 4648447 ~ 4671336 (+)
LOC103024921 LOC108441252,LOC108258536 coding upstream 433084 4507634 ~ 4624848 (+)
LOC103041106 NA coding upstream 636758 4388156 ~ 4421174 (+)
rad23a rad23a coding downstream 659 5060535 ~ 5071142 (+)
LOC103031288 NA coding downstream 394816 5454692 ~ 5457457 (+)
rnaseh2a rnaseh2a,LOC107747423 coding downstream 417659 5477535 ~ 5486445 (+)
snrpb2 snrpb2,LOC107684252,LOC107676294 coding downstream 427586 5487462 ~ 5493881 (+)
LOC103027484 LOC108441199,LOC108258526 coding downstream 458197 5518073 ~ 5527443 (+)
G100956 NA non-coding upstream 29524 4972964 ~ 5028408 (+)
G100962 NA non-coding upstream 32445 4996838 ~ 5025487 (+)
G100958 NA non-coding upstream 66938 4988872 ~ 4990994 (+)
G100938 NA non-coding upstream 76584 4970910 ~ 4981348 (+)
G100933 NA non-coding upstream 116763 4861646 ~ 4941169 (+)
G100974 NA non-coding downstream 21891 5081767 ~ 5083805 (+)
G101007 NA non-coding downstream 114067 5173943 ~ 5177140 (+)
G101020 NA non-coding downstream 217388 5277264 ~ 5277491 (+)
G101167 NA non-coding downstream 219151 5279027 ~ 5283843 (+)
G101186 NA non-coding downstream 303990 5363866 ~ 5364347 (+)
atg4d atg4d other upstream 412576 4629123 ~ 4645356 (+)
G100820 akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 other upstream 790106 4250083 ~ 4267826 (+)
LOC103022119 NA other upstream 997183 4011995 ~ 4060749 (+)
LOC103023443 NA other upstream 1828566 3226739 ~ 3229366 (+)
G100314 NA other upstream 1848602 3158656 ~ 3209330 (+)
G100975 NA other downstream 26884 5086760 ~ 5091748 (+)
G101452 NA other downstream 1222149 6282025 ~ 6407811 (+)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 1240238 6300114 ~ 6302702 (+)
LOC103032856 march9,LOC108435943 other downstream 1895443 6955319 ~ 6997446 (+)
G101622 zc3h13 other downstream 2084926 7144802 ~ 7146340 (+)

Expression


Co-expression Network