G101007


Basic Information

Item Value
gene id G101007
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 5173943 ~ 5177140 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU136424
gccttataaggagatagagagtccaagaacgggtggaaaatgAGAAGGAGCAGTAAATAaagtgcgacagagagagacaggggaggcatgtaaacaaaagctcgccagagaaacattttattttttttttttttcattatagtagAGACAGTTTCTCCAACAAAAGACCCTCCTGACTAAaggaatcatttttaaattaggtCAAATAAGGGTTAAAGAAAGTGAGACTCACTGAGCCGAACCAGGCCCTCGCAATCCAGAGCATGTGGCTGAATATTCATTTCACAAGAATTTATGCTGAAAATAAcagtattatatatacagtacagattacagtactccctctctctctctctctctctctctctctcttccgtgTGTAGGAGGAGAATCTGGGCGCAACGCCATACTGCATAGATCTCACACAACACTGAAATCCTtcccctctctccatccctctctttatactctctctatttctctctctccatctctctccaaaCCCCATTTCTCTTTCATACCTTcctttacactctctctctcaactcgTTTAGTTAATCTGTCTCGcccacacctctctctctctctgtccaccaccttttttcttctttctctctttctctttctcacacttttgcacattctctctctgcttctcagtctctctgtagctctctccatctttctttcatttctttctctctcatctaCCTTTACCTTTCCTCTATTTTTCGTtatttcattctctttctcttaacCAGTCATATCTCTTCCTTTccactttctccttctctcttttcaccctcttctctctctcaaccCCTTTTACATTCTTTCATTTTTGTAACTGTATTCCCTCTCTATAAatcagtctttctttctttctttttccctctcttaaCTGTATCTTTCTATAAATCACAactgttcagttttttttctttttttaaccaccctttttgttatttctttctttcgaaacagttttttctttaaaacacaACTGTTACCTTCTCTTACTCTATTTCTTTTAACcacaattttctttctttctttctttttttctttctttctttctatctttcttttttctttttttcctttttctaaaCTGTATCTTTCTCTAAATCACAACTGTTCCATTCTCTCACTCCATTTCTTTTAActacctttctttctttctttctttctttctctaaatCAGTACTTTCCTTTGCACTCTTTCACAActttttttctatcttttttgccccctctctcactctttctctctcaacaatttcttttatttcttcaaTCTGTAAACCAGTaatacctcactctaaccaatATTCCgatttacactctctctctccactttgtcttattttatctcattctctctctctctctctctctctctttttctctccttttttttagaCTCTGTGACTCAACCAGTCATATCTCTAttgccctctctctttccctctttctttccattctctctcttaGACTCTCTTTtacactatttctctctctaaacCCATCATATATTTTCTCTAaactcttcatctctctctctgtaattgAACCCTGTGCTCGGACCCCTCACTCGTCCAACACCATTTACCACTCTCTTGCACGGCGGCCATGTCAACAGCCGAGCTCCGCCGTCTCCAATGGCAACCGACACTGCCCCTTGGATACAGCCCAAGCGCGGTTTACTGGGACACCACTCGGTTGCCATGGCACCAGCCTAAATCAAAGCCAATCGCTCAGAATGAATGGGGTTGTGGGGGCGGAGCCGCTAAGCGCTCGCTTGGTTGcgtttcttgtttttgttgtcGGCGTTGTTTTGGAATGGCCGTCGCCATATACCCACACGCCTGACTGCTGATTACTATTCATGaagtttatattaaaacataaacatgGTTGTTTATGGAAACAAAAGTCGTTCTTCTATGGCGCCACGCAAAGAAACGTGTGAACCTTaatcacaagatatcacctcataACTTATAACTCAAGCTGTCCATCTGTGGTATTACTTTTGGGATATCAGTGTATTGCAtactgtacaaaaatatatgtgtgtgtgtgtgtgtgtcagacatTCCGTCTGGAGTCCAGGCCTAGGCCTCAGATTGCCAGGTTAGCGTATGATGGCATTGCCGCTCTGTGTTATAGAGTCCAGATGATAGTGCCAGTTTatcaggaagtgtgtgtgtgtgtggtgtgtgtgtaagtgtgtgccAGTGGGACTTGGGTGCAAACTAGCCGCTAATTCCTCCAGTGACGCCTTGGCTGGGTGTAAATTCAGTAAATGATTTGGATGAAGGACGGATGAATGAACTTCAGCAGCATTTTCAGCTTGTTTGTAACAAACAATtagtataaaattaaattaggtTTTAAGTTGGTGAACATTTGCggctacatatatatttaaacggAGATCTTTAAGATTTTTTACTTAAATCAGCTTATAATTGCATACCTTAGCCTTTCCTTCCATTGGGATCTACCACCATCATGTATTCATTGATCCATTCACTGATACCCACTGTCGGTGTGTAGATGTATAGATCATAgtccaaatcctgctggaaaatgaaatccccatcTCCACTTTCCAGGAAaatactgcactgactttggactttataaaacacagtggatcaacagcagcagatgacatgtctctccaaaccatcactgatcatcattataaaattttacatttaatttggaaattaaaggatcagagtctggaggaagagtggagagacacacagtccaaactgctcgaggtctagtgtgaagtttccaccaatcagtgatggtttggagagtcat
>TU136425
gccttataaggagatagagagtccaagaacgggtggaaaatgAGAAGGAGCAGTAAATAaagtgcgacagagagagacaggggaggcatgtaaacaaaagctcgccagagaaacattttattttttttttttttcattatagtagAGACAGTTTCTCCAACAAAAGACCCTCCTGACTAAaggaatcatttttaaattaggtCAAATAAGGGTTAAAGAAAGTGAGACTCACTGAGCCGAACCAGGCCCTCGCAATCCAGAGCATGTGGCTGAATATTCATTTCACAAGAATTTATGCTGAAAATAAcagtattatatatacagtacagattacagtactccctctctctctctctctctctctctctctcttccgtgTGTAGGAGGAGAATCTGGGCGCAACGCCATACTGCATAGATCTCACACAACACTGAAATCCTtcccctctctccatccctctctttatactctctctatttctctctctccatctctctccaaaCCCCATTTCTCTTTCATACCTTcctttacactctctctctcaactcgTTTAGTTAATCTGTCTCGcccacacctctctctctctctgtccaccaccttttttcttctttctctctttctctttctcacacttttgcacattctctctctgcttctcagtctctctgtagctctctccatctttctttcatttctttctctctcatctaCCTTTACCTTTCCTCTATTTTTCGTtatttcattctctttctcttaacCAGTCATATCTCTTCCTTTccactttctccttctctcttttcaccctcttctctctctcaaccCCTTTTACATTCTTTCATTTTTGTAACTGTATTCCCTCTCTATAAatcagtctttctttctttctttttccctctcttaaCTGTATCTTTCTATAAATCACAactgttcagttttttttctttttttaaccaccctttttgttatttctttctttcgaaacagttttttctttaaaacacaACTGTTACCTTCTCTTACTCTATTTCTTTTAACcacaattttctttctttctttctttttttctttctttctttctatctttcttttttctttttttcctttttctaaaCTGTATCTTTCTCTAAATCACAACTGTTCCATTCTCTCACTCCATTTCTTTTAActacctttctttctttctttctttctttctctaaatCAGTACTTTCCTTTGCACTCTTTCACAActttttttctatcttttttgccccctctctcactctttctctctcaacaatttcttttatttcttcaaTCTGTAAACCAGTaatacctcactctaaccaatATTCCgatttacactctctctctccactttgtcttattttatctcattctctctctctctctctctctctctttttctctccttttttttagaCTCTGTGACTCAACCAGTCATATCTCTAttgccctctctctttccctctttctttccattctctctcttaGACTCTCTTTtacactatttctctctctaaacCCATCATATATTTTCTCTAaactcttcatctctctctctgtaattgAACCCTGTGCTCGGACCCCTCACTCGTCCAACACCATTTACCACTCTCTTGCACGGCGGCCATGTCAACAGCCGAGCTCCGCCGTCTCCAATGGCAACCGACACTGCCCCTTGGATACAGCCCAAGCGCGGTTTACTGGGACACCACTCGGTTGCCATGGCACCAGCCTAAATCAAAGCCAATCGCTCAGAATGAATGGGGTTGTGGGGGCGGAGCCGCTAAGCGCTCGCTTGGTTGcgtttcttgtttttgttgtcGGCGTTGTTTTGGAATGGCCGTCGCCATATACCCACACGCCTGACTGCTGATTACTATTCATGaagtttatattaaaacataaacatgGTTGTTTATGGAAACAAAAGTCGTTCTTCTATGGCGCCACGCAAAGAAACGTGTGAACCTTaatcacaagatatcacctcataACTTATAACTCAAGCTGTCCATCTGTGGTATTACTTTTGGGATATCAGTGTATTGCAtactgtacaaaaatatatgtgtgtgtgtgtgtgtgtcagacatTCCGTCTGGAGTCCAGGCCTAGGCCTCAGATTGCCAGGTTAGCGTATGATGGCATTGCCGCT

Function

GO:

id name namespace
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process

KEGG:

id description
ko04923 Regulation of lipolysis in adipocytes

RNA

RNA id representative length rna type GC content exon number start site end site
TU136424 True 2841 lncRNA 0.40 4 5173943 5177140
TU136425 False 2161 lncRNA 0.40 3 5173943 5176331

Neighbor

gene id symbol gene type direction distance location
rad23a rad23a coding upstream 102801 5060535 ~ 5071142 (+)
LOC103026170 NA coding upstream 369396 4796254 ~ 4804547 (+)
LOC103042234 meis1,LOC107757034 coding upstream 387058 4730629 ~ 4786885 (+)
LOC103025559 actr2,LOC108423375,LOC108441254,LOC104930021,LOC106585927,LOC107583198 coding upstream 502607 4648447 ~ 4671336 (+)
LOC103024921 LOC108441252,LOC108258536 coding upstream 549095 4507634 ~ 4624848 (+)
LOC103031288 NA coding downstream 277552 5454692 ~ 5457457 (+)
rnaseh2a rnaseh2a,LOC107747423 coding downstream 300395 5477535 ~ 5486445 (+)
snrpb2 snrpb2,LOC107684252,LOC107676294 coding downstream 310322 5487462 ~ 5493881 (+)
LOC103027484 LOC108441199,LOC108258526 coding downstream 340933 5518073 ~ 5527443 (+)
fbxo48 fbxo48,LOC107684254 coding downstream 410149 5587289 ~ 5590899 (+)
G100974 NA non-coding upstream 90138 5081767 ~ 5083805 (+)
G100973 NA non-coding upstream 92262 5033650 ~ 5081681 (+)
G100984 NA non-coding upstream 114067 5057932 ~ 5059876 (+)
G100956 NA non-coding upstream 145535 4972964 ~ 5028408 (+)
G100962 NA non-coding upstream 148456 4996838 ~ 5025487 (+)
G101020 NA non-coding downstream 100124 5277264 ~ 5277491 (+)
G101167 NA non-coding downstream 101887 5279027 ~ 5283843 (+)
G101186 NA non-coding downstream 186726 5363866 ~ 5364347 (+)
G101207 NA non-coding downstream 288810 5465950 ~ 5466415 (+)
G101232 NA non-coding downstream 337243 5514383 ~ 5514689 (+)
G100975 NA other upstream 82195 5086760 ~ 5091748 (+)
atg4d atg4d other upstream 528587 4629123 ~ 4645356 (+)
G100820 akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 other upstream 906117 4250083 ~ 4267826 (+)
LOC103022119 NA other upstream 1113194 4011995 ~ 4060749 (+)
LOC103023443 NA other upstream 1944577 3226739 ~ 3229366 (+)
G101452 NA other downstream 1104885 6282025 ~ 6407811 (+)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 1122974 6300114 ~ 6302702 (+)
LOC103032856 march9,LOC108435943 other downstream 1778179 6955319 ~ 6997446 (+)
G101622 zc3h13 other downstream 1967662 7144802 ~ 7146340 (+)
LOC103042156 NA other downstream 2207617 7384757 ~ 7393225 (+)

Expression


Co-expression Network