G101472


Basic Information

Item Value
gene id G101472
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 6493969 ~ 6566181 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU137004
TTTTATAGTAAAAAACATAACGTATTTATTTCTCACTGTTTTCCAAAGCTATACatcacttttttacatcaaaactGTACACAAAACATTGCCATTTTCTCTTGTTTCCTGACATGGATGTGCTATCTCAATTTTTGCATTAAACATTCATTAAATAGTATTTGGTTAACCAAGGgctgtaaaaaatatacactcagaaagggttctattttagggctgggcaatatggtaaatacaattctggaaaaaaaacgagaccacttaaaaattatgtgtttctttgatttgaccaaattgaaaacctctggaatataatcaagaggaagatggatgatcacaagccatcaaaccaaactgaactgcttgaatgtttgcaccaggagtgagtagcataaagttatccaaaagcagtgtgtaagactggtggaggtgattgaaaaccaggcttattctaccaaatattgatttctgaactattaaaactttatgaatatgaacttgttgttttctttgcattatttgaggtctgaaagctctgcatctttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU137004 True 546 lncRNA 0.33 2 6493969 6566181

Neighbor

gene id symbol gene type direction distance location
LOC103031289 dachc,LOC108435962,LOC108259061,LOC107732708,LOC107602747 coding upstream 31384 6351249 ~ 6462585 (+)
dis3 dis3 coding upstream 213858 6257549 ~ 6280111 (+)
LOC103034899 LOC103034899,LOC108441992 coding upstream 275483 6214049 ~ 6218486 (+)
LOC103030021 LOC108441987,LOC108258654 coding upstream 392648 6050850 ~ 6101321 (+)
LOC103029379 kcnq5,LOC108441989,LOC100711684,LOC102297355,LOC103148493 coding upstream 474010 5808438 ~ 6019959 (+)
LOC103037816 cunh3orf70,LOC108435969,LOC107556711,LOC105912663,LOC102778299 coding downstream 126094 6692275 ~ 6733982 (+)
alg11 alg11,LOC107556718 coding downstream 610347 7176528 ~ 7183893 (+)
spp2 NA coding downstream 624143 7190324 ~ 7196997 (+)
LOC103040632 LOC108435946,LOC107747441,LOC107676094 coding downstream 706377 7272558 ~ 7281839 (+)
pld6 pld6,LOC107583251 coding downstream 719311 7285492 ~ 7289120 (+)
G101466 NA non-coding upstream 120672 6372757 ~ 6373297 (+)
G101455 NA non-coding upstream 145674 6338045 ~ 6348295 (+)
G101462 NA non-coding upstream 146836 6346557 ~ 6347133 (+)
G101459 NA non-coding upstream 180029 6312903 ~ 6313940 (+)
G101454 bora,LOC107556689 non-coding upstream 197062 6289342 ~ 6296907 (+)
G101490 NA non-coding downstream 13076 6579257 ~ 6627008 (+)
G101583 NA non-coding downstream 122104 6688285 ~ 6688632 (+)
G101610 NA non-coding downstream 431909 6998090 ~ 7013954 (+)
G101609 NA non-coding downstream 432905 6999086 ~ 7094070 (+)
G101626 NA non-coding downstream 528366 7094547 ~ 7120309 (+)
G101452 NA other upstream 86158 6282025 ~ 6407811 (+)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 191267 6300114 ~ 6302702 (+)
G100975 NA other upstream 1402221 5086760 ~ 5091748 (+)
atg4d atg4d other upstream 1848613 4629123 ~ 4645356 (+)
G100820 akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 other upstream 2226143 4250083 ~ 4267826 (+)
LOC103032856 march9,LOC108435943 other downstream 389138 6955319 ~ 6997446 (+)
G101622 zc3h13 other downstream 578621 7144802 ~ 7146340 (+)
LOC103042156 NA other downstream 818576 7384757 ~ 7393225 (+)
G102015 NA other downstream 2148658 8714839 ~ 8719235 (+)
LOC103025691 NA other downstream 2231564 8797745 ~ 8836081 (+)

Expression


Co-expression Network