G101490


Basic Information

Item Value
gene id G101490
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 6579257 ~ 6627008 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU137028
tttagttttcctatatcgccaagtatatcgttatcgcaaaaataccctgaaatattgtgatattattttagagccatatcgcccaccatTAATAGACACTCCATCTAATAAATGCTTTCAGATGCTTTATTAGATTTAATTGCACCCATTCCTGACACACAtgagcaaatgcacacacacagctcgtCCAGTCCCTGTAGCAAAGTATTGCCAGTAGAATAGGACCCTCTGGAGCAGATGTGTGTGTTGGAGATgtattaagctgtggagcagtggaagaactgtgttctctgaaatgatgaagcttaatacaataatacttttgggatgagttggttatgaggtttttgttttaatagttCTGAATCAGACCAAATGAACCAAATGAAAGCAGAGGGAATGAACTCATGCTGAAATGATCTAGTTGTTTCCAGTATGTATTAAAGTGAGGTCAGGCCTTTACACTCTCTTGTTTTTCACTAAAGTCTCATTAATTCCTTAAGATTGAGAGAAAGGTGGAGGAGGATGTTTTGTAAGAGGTTATAAGAGAGTAGCAGGATTGAACAAGTCTGACTGCTCTCTGTTCTGCTCTTCAAATCCTCCGTTCTGCTGCTCCtttctttatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU137028 True 627 lncRNA 0.38 2 6579257 6627008

Neighbor

gene id symbol gene type direction distance location
LOC103036567 LOC108435966 coding upstream 30911 6538347 ~ 6548346 (+)
LOC103031597 ubac2 coding upstream 49944 6521314 ~ 6529313 (+)
LOC111193520 NA coding upstream 65999 6512464 ~ 6513258 (+)
LOC103025984 ubac2 coding upstream 77639 6484337 ~ 6501618 (+)
LOC103031289 dachc,LOC108435962,LOC108259061,LOC107732708,LOC107602747 coding upstream 116672 6351249 ~ 6462585 (+)
LOC103037816 cunh3orf70,LOC108435969,LOC107556711,LOC105912663,LOC102778299 coding downstream 65267 6692275 ~ 6733982 (+)
alg11 alg11,LOC107556718 coding downstream 549520 7176528 ~ 7183893 (+)
spp2 NA coding downstream 563316 7190324 ~ 7196997 (+)
LOC103040632 LOC108435946,LOC107747441,LOC107676094 coding downstream 645550 7272558 ~ 7281839 (+)
pld6 pld6,LOC107583251 coding downstream 658484 7285492 ~ 7289120 (+)
G101472 NA non-coding upstream 13076 6493969 ~ 6566181 (+)
G101483 NA non-coding upstream 42355 6529751 ~ 6536902 (+)
G101485 NA non-coding upstream 45499 6532003 ~ 6533758 (+)
G101466 NA non-coding upstream 205960 6372757 ~ 6373297 (+)
G101455 NA non-coding upstream 230962 6338045 ~ 6348295 (+)
G101583 NA non-coding downstream 61277 6688285 ~ 6688632 (+)
G101610 NA non-coding downstream 371082 6998090 ~ 7013954 (+)
G101609 NA non-coding downstream 372078 6999086 ~ 7094070 (+)
G101626 NA non-coding downstream 467539 7094547 ~ 7120309 (+)
G101620 NA non-coding downstream 491858 7118866 ~ 7119981 (+)
G101452 NA other upstream 171446 6282025 ~ 6407811 (+)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 276555 6300114 ~ 6302702 (+)
G100975 NA other upstream 1487509 5086760 ~ 5091748 (+)
atg4d atg4d other upstream 1933901 4629123 ~ 4645356 (+)
G100820 akt3b,LOC108438606,LOC108259077,LOC107594289,LOC107729704,LOC107703832,LOC101071975 other upstream 2311431 4250083 ~ 4267826 (+)
LOC103032856 march9,LOC108435943 other downstream 328311 6955319 ~ 6997446 (+)
G101622 zc3h13 other downstream 517794 7144802 ~ 7146340 (+)
LOC103042156 NA other downstream 757749 7384757 ~ 7393225 (+)
G102015 NA other downstream 2087831 8714839 ~ 8719235 (+)
LOC103025691 NA other downstream 2170737 8797745 ~ 8836081 (+)

Expression


Co-expression Network