G101610


Basic Information

Item Value
gene id G101610
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 6998090 ~ 7013954 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU137194
cggaaccgagttgctgcctATTCCTTCgagtgctctgtgatgctactcagtaattcTGCATCAGCCTAAGAcacttattaataatatttatttattttctttctttctaagtCTTTAAACCCTAAAAAAAGAATCAGCCAAGCTTGTTCCCAATagtgctgtttttattattacaaaaatcattcttaaaaacatttacaaatcaGAACATGGGTTTATCCTGTGGGTTGTGCAGTTTTGTATGgtaacagagaaagaaagaagctcAACTCACCAGCTTCATTCACATTTCTAGAGGAGAGGGAGGTTTGAAAGTTTGCTGGACACAATTTATTTAACTTCTAAAAGTGAATCCAAGAGTTTGATTAAGGTCAGGTATGAACACTTATGAATACTTACTTACAGTCAGGAGTTTACAGACCACAGGAAACCCATTTAACTCATTAACGCAGGGTAAAATGATCCTATGATTAAAGCAACTCTCTTGATCAGCTTATCCTCTAtccatctacctatctatctaatacAGTGAGCAGAAGGAGTGaacctggaaaaaaatgtgtgatGATATTGGAGATTGATGgtgtatactagtgcatctccaaaaacatattgaaatacaactttatttcagttattctgttcaaaatgtgaaactcatatattataaatgtattacacacagagtgatctattttaattgtttaattattttattgttgatgattatggcttacagccaatgaaaaccaaaaaatcagtgtctcagaaaatatttatattatagaccaattacttttagcagtgtgggcagtgtaccaagtcctgctggaaaatgaaatctgcatctctataaaagttgtcagtagcagagggaagaagcatgaagtgctgtaagatttt

Function

NR:

description
uncharacterized protein LOC103046400

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0006812 cation transport biological_process
GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient biological_process

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU137194 True 903 lncRNA 0.34 2 6998090 7013954

Neighbor

gene id symbol gene type direction distance location
LOC103037816 cunh3orf70,LOC108435969,LOC107556711,LOC105912663,LOC102778299 coding upstream 264108 6692275 ~ 6733982 (+)
igf2bp2 igf2bp2,LOC108435967,LOC105911772,LOC107749880,LOC107704342 coding upstream 364724 6553811 ~ 6633366 (+)
LOC103036567 LOC108435966 coding upstream 449744 6538347 ~ 6548346 (+)
LOC103031597 ubac2 coding upstream 468777 6521314 ~ 6529313 (+)
LOC111193520 NA coding upstream 484832 6512464 ~ 6513258 (+)
alg11 alg11,LOC107556718 coding downstream 162574 7176528 ~ 7183893 (+)
spp2 NA coding downstream 176370 7190324 ~ 7196997 (+)
LOC103040632 LOC108435946,LOC107747441,LOC107676094 coding downstream 258604 7272558 ~ 7281839 (+)
pld6 pld6,LOC107583251 coding downstream 271538 7285492 ~ 7289120 (+)
LOC103040938 rab3da,LOC103040938,LOC108435977,LOC108258507,LOC107757002,LOC107747429,LOC107675349,LOC107569532 coding downstream 280331 7294285 ~ 7318919 (+)
G101583 NA non-coding upstream 309458 6688285 ~ 6688632 (+)
G101490 NA non-coding upstream 371082 6579257 ~ 6627008 (+)
G101472 NA non-coding upstream 431909 6493969 ~ 6566181 (+)
G101483 NA non-coding upstream 461188 6529751 ~ 6536902 (+)
G101485 NA non-coding upstream 464332 6532003 ~ 6533758 (+)
G101626 NA non-coding downstream 80593 7094547 ~ 7120309 (+)
G101620 NA non-coding downstream 104912 7118866 ~ 7119981 (+)
G101636 NA non-coding downstream 160711 7174665 ~ 7174889 (+)
G101656 NA non-coding downstream 255852 7269806 ~ 7270143 (+)
G101674 NA non-coding downstream 355321 7369275 ~ 7369582 (+)
LOC103032856 march9,LOC108435943 other upstream 644 6955319 ~ 6997446 (+)
G101452 NA other upstream 590279 6282025 ~ 6407811 (+)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 695388 6300114 ~ 6302702 (+)
G100975 NA other upstream 1906342 5086760 ~ 5091748 (+)
atg4d atg4d other upstream 2352734 4629123 ~ 4645356 (+)
G101622 zc3h13 other downstream 130848 7144802 ~ 7146340 (+)
LOC103042156 NA other downstream 370803 7384757 ~ 7393225 (+)
G102015 NA other downstream 1700885 8714839 ~ 8719235 (+)
LOC103025691 NA other downstream 1783791 8797745 ~ 8836081 (+)
trnar-ucu_1 NA other downstream 1819886 8833840 ~ 8833931 (+)

Expression


Co-expression Network