LOC103042156


Basic Information

Item Value
gene id LOC103042156
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 7384757 ~ 7393225 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU137276
ATTCTTTCTCCCACACATACGTACATAGGTTATACACACTTCTCCTGATAGGTGATGTGTCTGGAAGTTCTGCATGCCTGTATCTTTAGGCACATCTGACTTCTTCTGCGTCTGGTGAAAGGTGGGAGATCGTCCATGGCGTCCTCTGTCTTCTTATCTTTCAGCATCATCTTCACCATCCTGCAGGGGCTAACACTCATAACCAGTGGAAATAGTAATGAAACTGAGTTGAACTGTATTCCAACTATCAAAGTTCCTCGCAACACAGTGTGGACAGTTTCAGAAAATGCAACCCTAAAGATCAACTG
>XM_007246669.3
AAGAAGTCGTAAAGGTGACGTttgtgagagtgaaagagaaatgtagatgacagagagagagagcgagggagagacaAAGAAGCATCAGCTGTAATTCTTTCTCCCACACATACGTACATAGGTTATACACACTTCTCCTGATAGGTGATGTGTCTGGAAGTTCTGCATGCCTGTATCTTTAGGCACATCTGACTTCTTCTGCGTCTGGTGAAAGGTGGGAGATCGTCCATGGCGTCCTCTGTCTTCTTATCTTTCAGCATCATCTTCACCATCCTGCAGGGGCTAACACTCATAACCAGTGGAAATAGTAATGAAACTGAGTTGAACTGTATTCCAACTATCAAAGTTCCTCGCAACACAGTGTGGACAGTTTCAGAAAATGCAACCCTAAAGATCAACTGTTCTATTTTTACTGAACCCCACTGTTGGCAGAGCTTATTAGCCTCATGGTGCAGAATTAATGATGAAAACGAATGCCGACTAATGAATCAGTCCAATCACAGAGCAACAGAATGGAGgaatattactgaaaatcaACGGATGTTTATCCTGATTTTCTGGAACTTATCCAAGCAGGACGCTGGTCTGTACAGGTGTCTGACACATGCACCTGTATCTACTTCAGGCCATGCTATCAGTGTGAATGTGACAGAATACATTACACACTCTGAAGTcatacaaaatgaaaataagacAACAAATGGAACTCGAGAAGAGTCGTCAGATATGGCCTGGCTGTGGCCCTATGTGTACATCAGCAGTGGGATTATAGTGCTGGTCCTCACAGTGATTGTTGTGGCTCTGCTTCTGCTCCGGTGccgagGGTCAAAAGAGCGAAAACAGCAAATAGCTGAGAATCAGTTCAGTGTGGCCCACACACCTTCTTTTAGTCCACGGGTACGTAGCACCCTTCAACCTGGCAACACCCACAGTCTTCCACCACAGCTCAGTCCAACATCAGACCTCATCTACGGTAACGCTCCAATCAGAGCCTCATCTCAGAAAGACCGGCATTCCAGGGGCCATCCAGCCAATCACGCGGCCAAGCCGCGGCGGGGGCACGACCACTTCACTGAGGAGCTGGAGGACGAGGACAATCCACTGGTGTACGCCTCTCTCAATCACAAAGTGATGCCACGCCCACCAGTCAGAGTCACCCTGCCAGAGGAGACCTCTGAATACGCTGCCATCCGAGTCTCCTGagactttcagacttttgactgactgactgagaacagctttaaattaaagtgtaaagtgtaaaatatttaagaGCAGCTAGCCATCTACACCATATCAATTTATACTCTGTTGTTGTGAAATGCAAAAGATTGAgagaatgtattatttttttagaacttGTAAATCAAATGCTTTGTacataataatgattttttttattaaaaaaaaaacaattgtggGA
>XM_007246670.3
GAAGAAGTCGTAAAGGTGACGTttgtgagagtgaaagagaaatgtagatgacagagagagagagcgagggagagacaAAGAAGCATCAGCTGTAATTCTTTCTCCCACACATACGTACATAGGTTATACACACTTCTCCTGATAGGTGATGTGTCTGGAAGTTCTGCATGCCTGTATCTTTAGGCACATCTGACTTCTTCTGCGTCTGGTGAAAGGTGGGAGATCGTCCATGGCGTCCTCTGTCTTCTTATCTTTCAGCATCATCTTCACCATCCTGCAGGGGCTAACACTCATAACCAGTGGAAATAGTAATGAAACTGAGTTGAACTGTATTCCAACTATCAAAGTTCCTCGCAACACAGTGTGGACAGTTTCAGAAAATGCAACCCTAAAGATCAACTGTTCTATTTTTACTGAACCCCACTGTTGGCAGAGCTTATTAGCCTCATGGTGCAGAATTAATGATGAAAACGAATGCCGACTAATGAATCAGTCCAATCACAGAGCAACAGAATGGAGgaatattactgaaaatcaACGGATGTTTATCCTGATTTTCTGGAACTTATCCAAGCAGGACGCTGGTCTGTACAGGTGTCTGACACATGCACCTGTATCTACTTCAGGCCATGCTATCAGTGTGAATGTGACAGATGGAACTCGAGAAGAGTCGTCAGATATGGCCTGGCTGTGGCCCTATGTGTACATCAGCAGTGGGATTATAGTGCTGGTCCTCACAGTGATTGTTGTGGCTCTGCTTCTGCTCCGGTGccgagGGTCAAAAGAGCGAAAACAGCAAATAGCTGAGAATCAGTTCAGTGTGGCCCACACACCTTCTTTTAGTCCACGGGTACGTAGCACCCTTCAACCTGGCAACACCCACAGTCTTCCACCACAGCTCAGTCCAACATCAGACCTCATCTACGGTAACGCTCCAATCAGAGCCTCATCTCAGAAAGACCGGCATTCCAGGGGCCATCCAGCCAATCACGCGGCCAAGCCGCGGCGGGGGCACGACCACTTCACTGAGGAGCTGGAGGACGAGGACAATCCACTGGTGTACGCCTCTCTCAATCACAAAGTGATGCCACGCCCACCAGTCAGAGTCACCCTGCCAGAGGAGACCTCTGAATACGCTGCCATCCGAGTCTCCTGagactttcagacttttgactgactgactgagaacagctttaaattaaagtgtaaagtgtaaaatatttaagaGCAGCTAGCCATCTACACCATATCAATTTATACTCTGTTGTTGTGAAATGCAAAAGATTGAgagaatgtattatttttttagaacttGTAAATCAAATGCTTTGTacataataatgattttttttattaaaaaaaaaacaattgtggGA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG:

id description
ko03050 Proteasome

RNA

RNA id representative length rna type GC content exon number start site end site
TU137276 False 308 lncRNA 0.44 2 7384851 7389759
XM_007246669.3 True 1423 mRNA 0.45 6 7384758 7393225
XM_007246670.3 False 1376 mRNA 0.45 5 7384757 7393225

Neighbor

gene id symbol gene type direction distance location
LOC103041253 NA coding upstream 39693 7338167 ~ 7345064 (+)
LOC103040938 rab3da,LOC103040938,LOC108435977,LOC108258507,LOC107757002,LOC107747429,LOC107675349,LOC107569532 coding upstream 65838 7294285 ~ 7318919 (+)
pld6 pld6,LOC107583251 coding upstream 95637 7285492 ~ 7289120 (+)
LOC103040632 LOC108435946,LOC107747441,LOC107676094 coding upstream 102918 7272558 ~ 7281839 (+)
spp2 NA coding upstream 187760 7190324 ~ 7196997 (+)
tpt1 tpt1,LOC107691594,LOC107567988,LOC107598740,LOC107654875 coding downstream 42405 7435630 ~ 7443495 (+)
pibf1 pibf1 coding downstream 76118 7469343 ~ 7538634 (+)
LOC103044305 NA coding downstream 149115 7542340 ~ 7560927 (+)
LOC103034778 LOC108437774 coding downstream 316074 7709299 ~ 7770528 (+)
LOC103023156 NA coding downstream 1147769 8540994 ~ 8543564 (+)
G101679 LOC107655627,LOC107559781,LOC108256914,LOC108437766,LOC105901645 non-coding upstream 2282 7378262 ~ 7382475 (+)
G101676 NA non-coding upstream 13360 7371071 ~ 7371397 (+)
G101674 NA non-coding upstream 15175 7369275 ~ 7369582 (+)
G101656 NA non-coding upstream 114614 7269806 ~ 7270143 (+)
G101636 NA non-coding upstream 209868 7174665 ~ 7174889 (+)
G101767 NA non-coding downstream 56688 7449913 ~ 7452365 (+)
G101776 NA non-coding downstream 103245 7496470 ~ 7498497 (+)
G101777 NA non-coding downstream 104206 7497431 ~ 7499837 (+)
G101778 NA non-coding downstream 110166 7503391 ~ 7628715 (+)
G101832 NA non-coding downstream 333932 7727157 ~ 7727563 (+)
G101622 zc3h13 other upstream 238417 7144802 ~ 7146340 (+)
LOC103032856 march9,LOC108435943 other upstream 387311 6955319 ~ 6997446 (+)
G101452 NA other upstream 976946 6282025 ~ 6407811 (+)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 1082055 6300114 ~ 6302702 (+)
G100975 NA other upstream 2293009 5086760 ~ 5091748 (+)
G102015 NA other downstream 1321614 8714839 ~ 8719235 (+)
LOC103025691 NA other downstream 1404520 8797745 ~ 8836081 (+)
trnar-ucu_1 NA other downstream 1440615 8833840 ~ 8833931 (+)
G102411 LOC107747660 other downstream 3132452 10525677 ~ 10526160 (+)
LOC111193528 NA other downstream 3475352 10868577 ~ 10870156 (+)

Expression


Co-expression Network