G101777


Basic Information

Item Value
gene id G101777
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 7497431 ~ 7499837 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU137410
cctagcaaccacctagaaacaccttagcaaccaccccagataccatagcaacaccttagcaaccacctagcaacatcttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaaccacttagaaacaccttagcaaccaccccagataccatagcaacaccttagcaaccacctagcaacaccctagcaaccgcatagcaacaccttagcaaccacctagcaacatcttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaaccacctagaaacaccttagcaaccaccccagataccatagcaacacttagcaacaacttagcaaccacctagcaacatcttagcaaccaccccagataccatagcaacaccttagcaacacctagcaaccacctagcaacaccctagcaaccacctagcaacaccttagcaactacctggtATATGTTAgcaattgcctagcaaccagttagcaatagcttaacaaccacctggaaaacattagcaactgcctagcaacagcttagcaaccttttcagaaatgatagcaactgcctagcaacacattagcaatcaaaagtttaaccaaaagttttacgatttcagcatttaaacaagcgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttttaGCATTTAGCGTTTAGCCAAAAGTTAACAGCATATCAATgactcttcacactcttcagacGGAAAAAGCTTAGCAAcc
>TU137411
gcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcatagcaacaccttagcaaccacctagcaacatcttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaaccacttagaaacaccttagcaaccaccccagataccatagcaacaccttagcaaccacctagcaacaccctagcaaccgcatagcaacaccttagcaaccacctagcaacatcttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaaccacctagaaacaccttagcaaccaccccagataccatagcaacacttagcaacaacttagcaaccacctagcaacatcttagcaaccaccccagataccatagcaacaccttagcaacacctagcaaccacctagcaacaccctagcaaccacctagcaacaccttagcaactacctggtATATGTTAgcaattgcctagcaaccagttagcaatagcttaacaaccacctggaaaacattagcaactgcctagcaacagcttagcaaccttttcagaaatgatagcaactgcctagcaacacattagcaatcaaaagtttaaccaaaagttttacgatttcagcatttaaacaagcgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttttaGCATTTAGCGTTTAGCCAAAAGTTAACAGCATATCAATgactcttcacactcttcagacGGAAAAAGCTTAGCAAcc
>TU137412
ccttagcaaccaccccagataccatagcaacaccttagcaaccacctagcaacatcttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaaccacttagaaacaccttagcaaccaccccagataccatagcaacaccttagcaaccacctagcaacatcttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaaccacctagaaacaccttagcaaccaccccagataccatagcaacacttagcaacaacttagcaaccacctagcaacatcttagcaaccaccccagataccatagcaacaccttagcaacacctagcaaccacctagcaacaccctagcaaccacctagcaacaccttagcaactacctggtATATGTTAgcaattgcctagcaaccagttagcaatagcttaacaaccacctggaaaacattagcaactgcctagcaacagcttagcaaccttttcagaaatgatagcaactgcctagcaacacattagcaatcaaaagtttaaccaaaagttttacgatttcagcatttaaacaagcgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacgtttttagatttcagcgtttttaGCATTTAGCGTTTAGCCAAAAGTTAACAGCATATCAATgactcttcacactcttcagacGGAAAAAGCTTAGCAAcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU137410 False 1000 lncRNA 0.41 2 7497431 7499837
TU137411 True 1007 lncRNA 0.41 2 7498593 7499837
TU137412 False 851 lncRNA 0.41 3 7498859 7499837

Neighbor

gene id symbol gene type direction distance location
tpt1 tpt1,LOC107691594,LOC107567988,LOC107598740,LOC107654875 coding upstream 53936 7435630 ~ 7443495 (+)
LOC103041253 NA coding upstream 152367 7338167 ~ 7345064 (+)
LOC103040938 rab3da,LOC103040938,LOC108435977,LOC108258507,LOC107757002,LOC107747429,LOC107675349,LOC107569532 coding upstream 178512 7294285 ~ 7318919 (+)
pld6 pld6,LOC107583251 coding upstream 208311 7285492 ~ 7289120 (+)
LOC103040632 LOC108435946,LOC107747441,LOC107676094 coding upstream 215592 7272558 ~ 7281839 (+)
LOC103044305 NA coding downstream 42503 7542340 ~ 7560927 (+)
LOC103034778 LOC108437774 coding downstream 209462 7709299 ~ 7770528 (+)
LOC103023156 NA coding downstream 1041157 8540994 ~ 8543564 (+)
LOC103024012 creb1a,LOC107757658,LOC107714305,LOC108437762,LOC107552236,LOC107691602 coding downstream 1150283 8650120 ~ 8664508 (+)
LOC111193523 NA coding downstream 1185067 8684904 ~ 8686520 (+)
G101767 NA non-coding upstream 45066 7449913 ~ 7452365 (+)
G101679 LOC107655627,LOC107559781,LOC108256914,LOC108437766,LOC105901645 non-coding upstream 114956 7378262 ~ 7382475 (+)
G101676 NA non-coding upstream 126034 7371071 ~ 7371397 (+)
G101674 NA non-coding upstream 127849 7369275 ~ 7369582 (+)
G101656 NA non-coding upstream 227288 7269806 ~ 7270143 (+)
G101778 NA non-coding downstream 3554 7503391 ~ 7628715 (+)
G101832 NA non-coding downstream 227320 7727157 ~ 7727563 (+)
G101836 NA non-coding downstream 286916 7786753 ~ 7798517 (+)
G101862 NA non-coding downstream 321601 7821438 ~ 7821748 (+)
G101863 NA non-coding downstream 349478 7849315 ~ 7849533 (+)
LOC103042156 NA other upstream 104206 7384757 ~ 7393225 (+)
G101622 zc3h13 other upstream 351091 7144802 ~ 7146340 (+)
LOC103032856 march9,LOC108435943 other upstream 499985 6955319 ~ 6997446 (+)
G101452 NA other upstream 1089620 6282025 ~ 6407811 (+)
G102015 NA other downstream 1215002 8714839 ~ 8719235 (+)
LOC103025691 NA other downstream 1297908 8797745 ~ 8836081 (+)
trnar-ucu_1 NA other downstream 1334003 8833840 ~ 8833931 (+)
G102411 LOC107747660 other downstream 3025840 10525677 ~ 10526160 (+)
LOC111193528 NA other downstream 3368740 10868577 ~ 10870156 (+)

Expression


Co-expression Network