G101836


Basic Information

Item Value
gene id G101836
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 7786753 ~ 7798517 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU137503
ACCGTTAGGGTCTATTCCCTCTTGTCAGCTGTCTTTCCATGCTGTCACAGGGTCTTTCCTCTGTTGTCAACTGTTCTCTTCACAGCAGTCACTAGCTTAACTAGATatcaagtaatataatacaggaaattgacaaatcctgcacctaacagctggggttatgcatagggctcagccaggatctactactcactcaactaacaacaatagcaaaaccaccacaatctgatactggctcgacaagaatccagaagcatagcgaactatgttcatggtccattgcctcaactgccaagtactcagacgtctacaaaaactcatgagacaaattattacaagagcaggaccacaccaatccccttcatccaaactctaacacaaacttcagtgcaagctcttctcaggggtcatcaggcaggcaccttccttcgtcagtgtttcgctgaattaggcccacgacacctccagaaggctcaacagtgaagtctggcgtcccagacccacccccctccaagcttgctgtagaagcacaaactcactcccttccccacacagcctcagcccttctgaaccacaaccactgactagatctttcagctacatctgacaactccttcactacagtccttagcacacgacctctaattccgaattcagacagcagtcttgtggcagacttcgcaacaaagcctctagtacctacctctaccggtctaatatacgcttgccacccacgctctctcacctcagccaccaagtctgtatacttcagccttttcctttcataagctccatctacctcgtcttcaaacggaacagtcagctctataaaatacactatccgcttactttcagagtacaacactacatccggcctcaaggttgtaaccagaatgcactctgggatctgcagtttactacctacatccactaataacttccaatctcgtgcattggcccacttaccagcagttttcaagcactgtgctgtttctccactatgctgcccctcacgcacaaacgtgattaccctactgcaacctaccacgggcatgttattaacttctaaccgtttcttatcaagtgcacctgcaagagatctaagtacctgattatgcctccatgtgtagcgcccctgggatagactcaccttacatgccgacaaaatgtgcttcagcGTGCCACTTCCTGCACATAGCTTACAACTTGGATCCTCACCCACCCACTGAGCAAGGTTTTGTGGCGTTGG
>TU137506
taatataatacaggaaattgacaaatcctgcacctaacagctggggttatgcatagggctcagccaggatctactactcactcaactaacaacaatagcaaaaccaccacaatctgatactggctcgacaagaatccagaagcacagcctaacactatgttcatggtccattgcctcaactgccaagtaacagacctaccaaaaaataacctatgaacaaacagaatacctccttaatctaagctcacttcctttaactatggcaacaacacacttacctaagcacaatcacacacaataaatcacattataagttgcttgagcagaacacagcaaccactaccatctgatactggctcgacaagaatccagaagcacagcctaacactatgttcatggtccgtgcctcaactgccaagtactcagacgtctacaaaaactcatgagacaaattattacaagagcaggaccacaccaatccccttcatccaaactctaacacaaacttcagtgcaagctcttctcaggggtcatcaggcaggcaccttccttcgtcagtgtttcgctgaattaggcccacgacacctccagaaggctcaacagtgaagtctggcgtcccagacccacccccctccaagcttgctgtagaagcacaaactcactcccttccccacacagcctcagcccttctgaaccacaaccactgactagatctttcagctacatctgacaactccttcactacagtccttagcacacgacctctaattccgaattcagacagcagtcttgtggcagacttcgcaacaaagcctctagtacctacctctaccggtctaatatacgcttgccacccacgctctctcacctcagccaccaagtctgtatacttcagccttttcctttcataagctccatctacctcgtcttcaaacggaacagtcagctctataaaatacactatccgcttactttcagagtacaacactacatccggcctcaaggttgtaaccagaatgcactctgggatctgcagtttactacctacatccactaataacttccaatctcgtgcattggcccacttaccagcagttttcaagcactgtgctgtttctccactatgctgcccctcacgcacaaacgtgattaccctactgcaacctaccacgggcatgttattaacttctaaccgtttcttatcaagtgcacctgcaagagatctaagtacctgattatgcctccatgtgtagcgcccctgggatagactcaccttacatgccgacaaaatgtgcttcagcGTGCCACTTCCTGCACATAGCTTACAACTTGGATCCTCACCCACCCACTGAGCAAGGTTTTGTGGCGTTGG
>TU137507
taatataatacaggaaattgacaaatcctgcacctaacagctggggttatgcatagggctcagccaggatctactactcactcaactaacaacaatagcaaaaccaccacaatctgatactggctcgacaagaatccagaagcacagcctaacactatgttcatggtccattgcctcaactgccaagtaacagacctaccaaaaaataacctatgaacaaacagaatacctccttaatctaagctcacttcctttaactatggcaacaacacacttacctaagcacaatcacacacaataaatcacattataagttgcttgagcagaacacagcaaccactaccatctgatactggctcgacaagaatccagaagcacagcctaacactatgttcatggtccgtgcctcaactgccaagtactcagacgtctacaaaaactcatgagacaaattattacaagagcaggaccacaccaatccccttcatccaaactctaacacaaacttcagtgcaagctcttctcaggggtcatcaggcaggcaccttccttcgtcagtgtttcgctgaattaggcccacgacacctccagaaggctcaacagtgaagtctggcgtcccagacccacccccctccaagcttgctgtagaagcacaaactcactcccttccccacacagcctcagcccttctgaaccacaaccactgactagatctttcagctacatctgacaactccttcactacagtccttagcacacgacctctaattccgaattcagacagcagtcttgtggcagacttcgcaacaaagcctctagtacctacctctaccggtctaatatacgcttgccacccacgctctctcacctcagccaccaagtctgtatacttcagccttttcctttcataagctccatctacctcgtcttcaaacggaacagtcagctctataaaatacactatccgcttactttcagagtacaacactacatccggcctcaaggttgtaaccagaatgcactctgggatctgcagtttactacctacatccactaataacttccaatctcgtgcattggcccacttaccagcagttttcaagcactgtgctgtttctccactatgctgcccctcacgcacaaacgtgattaccctactgcaacctaccacgggcatgttattaacttctaaccgtttcttatcaagtgcacctgcaagagatctaagtacctgattatgcctccatgtgtagcgcccctgggatagactcaccttacatgccgacaaaatgtgcttcagcGTGCCACTTCCTGCACATAGCTTACAACTTGGATCCTCACCCACCCACTGAGCAAGGTTTTGTGGCGTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU137503 False 1249 lncRNA 0.48 3 7788153 7798517
TU137506 True 1372 lncRNA 0.47 4 7786753 7798517
TU137507 False 1372 lncRNA 0.47 4 7786753 7798517

Neighbor

gene id symbol gene type direction distance location
LOC103034778 LOC108437774 coding upstream 16225 7709299 ~ 7770528 (+)
LOC103044305 NA coding upstream 225826 7542340 ~ 7560927 (+)
pibf1 pibf1 coding upstream 248119 7469343 ~ 7538634 (+)
tpt1 tpt1,LOC107691594,LOC107567988,LOC107598740,LOC107654875 coding upstream 343258 7435630 ~ 7443495 (+)
LOC103041253 NA coding upstream 441689 7338167 ~ 7345064 (+)
LOC103023156 NA coding downstream 742477 8540994 ~ 8543564 (+)
LOC103024012 creb1a,LOC107757658,LOC107714305,LOC108437762,LOC107552236,LOC107691602 coding downstream 851603 8650120 ~ 8664508 (+)
LOC111193523 NA coding downstream 886387 8684904 ~ 8686520 (+)
LOC103036357 NA coding downstream 1041557 8840074 ~ 8851853 (+)
serhl2 NA coding downstream 1293643 9092160 ~ 9105524 (+)
G101832 NA non-coding upstream 59190 7727157 ~ 7727563 (+)
G101778 NA non-coding upstream 158038 7503391 ~ 7628715 (+)
G101777 NA non-coding upstream 286916 7497431 ~ 7499837 (+)
G101776 NA non-coding upstream 288256 7496470 ~ 7498497 (+)
G101767 NA non-coding upstream 334388 7449913 ~ 7452365 (+)
G101862 NA non-coding downstream 22921 7821438 ~ 7821748 (+)
G101863 NA non-coding downstream 50798 7849315 ~ 7849533 (+)
G101868 NA non-coding downstream 108990 7907507 ~ 7908973 (+)
G101889 NA non-coding downstream 307208 8105725 ~ 8127938 (+)
G101892 NA non-coding downstream 345160 8143677 ~ 8143987 (+)
LOC103042156 NA other upstream 393528 7384757 ~ 7393225 (+)
G101622 zc3h13 other upstream 640413 7144802 ~ 7146340 (+)
LOC103032856 march9,LOC108435943 other upstream 789307 6955319 ~ 6997446 (+)
G101452 NA other upstream 1378942 6282025 ~ 6407811 (+)
G102015 NA other downstream 916322 8714839 ~ 8719235 (+)
LOC103025691 NA other downstream 999228 8797745 ~ 8836081 (+)
trnar-ucu_1 NA other downstream 1035323 8833840 ~ 8833931 (+)
G102411 LOC107747660 other downstream 2727160 10525677 ~ 10526160 (+)
LOC111193528 NA other downstream 3070060 10868577 ~ 10870156 (+)

Expression


Co-expression Network