LOC111193521


Basic Information

Item Value
gene id LOC111193521
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 8328448 ~ 8339269 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU137617
AATGTAACCCAGGTTACTAAAGCTGACACCCTTTAGAGAAATTACCCCTAGTAAGTATTATAGATTATCAAGTCCTAACGAATaagatgaaaataataaaatattaattaattaaaatattaaagaactaaaaatataattaataggaATTTCTTTGTGAAttgaaattagaaaaaaaaaagaactaaataattatttcagaaaatacttattttaaaaataaggcAACTATTTCTTTAAATCTGACCAGCAGTGGTAATAGGACAACCCCTATCGCGCCAATTTTATCCAGTAGAAACCCTGAAACAGATCACGCCACTATTTTAACCAATAGATAACTCTGAAGCAGCCTACTGCGCGGGAAGaccaaccaatcagcagctTAGTAAGTTAGTCTATACCCCCTGTGTGGAAAACGCATTCACTCTTGAGTTGGAAGCTGAACCGTGCGGATCGCGGCACAGCTATCGCGCTGAGAATAGAAAGCTACGTTGAGATATAAGTACCTCATACGTGAGTAATGCTTATTAGCCATCGGTACTAACGCTAGACGGCTAACAAGCAGTTCGGTCGTGTAAACCGGCGAGAGGATTTGTAACAGAGACGGAGTTATTCCGAGCGGGGAGCGAGTCTGTACAGCGGATCGCTTCGTCATCGCCGAGGTGAGCCGAGTGTACCGCGGATCGCTTAGTCATCGCCGCGGTGAGCCGATTCTTCGCTGTGAATCGTTTCGTCGCCCGAGCGGGAGCCGAGTCCTTGACGCGGATCCCAgactaacaaaaaataaaagaattccGGATCGGATTTGGTGAGTTCTACACTTTAAAAGCTGGTATTTTGGTTGGTTTTACGTGCATAGGTGAAGGTATAactgtttagctaagctaataagAGTGGGTTAAGCAAATCTTTTTCAATTGTACCCTTTTTTTCTGATGAGTTAAGGCTGTAATTCTGTAATGTTTAATACTACTGTGCTGTGATATATTAACGCTAAGTTTGGGATGTTAGATGTGTAACCAGAGACATAAGAACCTAAAAGGCTACTGTAAATAGTTGTTAAatgttaggaaaaaaaaaaactctgattgAGCACTAAAAGCCATGTTTCATATGAATAGGCCAGTTTCCCTGGGGATGAATCTTACTGATCTGCTCTGACCTGCCGCCTGGGTGCGAGAGTCCAGTCGAGTGGGACACGAGCTGGCGAGCCACGGTCCACGGAACTTCGTACCCGAGCATTGATTCTGAGTATCCCATATTTTTGAGGTTGGACTGT
>XR_002650574.1
ACTTCTTGTCGACAGAAGATGTAACTCCCAAAATCAAGGTAACAAAACCTAGGACAAGAGCAGCATCACATATAAATGACCCTGAAGAATCTGAAGTCGATTCAGATTTTGATGAAAGCCCCATTCACTACTACACATACCCACTCAGATTCAATCCAATAGAAGCAACATGCTCTATTGAGAACCCACCAAAAACAACCTCTGAAAACATACCTGAAGTAATCTCTGAGAATTTACCTGAAAACCTACCTGAAATGATTCCTGAAAACTTACCTGAAATGATTCCTGAAAACCCACCTGAGGATAGGGATGTCTTTCCCGAGTTACCAGGAGAAACATCACATATCACACTTGTAGCTACTGATCCTACTGTACACCAAACTGACTCCAAGGACACACCCGAACAAGTGGAACCTGAAAGCAAGATGGAAGAAGAGACAGAAATTCATCAACAGTCTTGTATAGCTGAAGAGGATGAAATGGAAAACCCAGTGAGACACTCTACTAGGTCTAGAACAAGAGCCAAAAGATTAACCTACCCTGAGTTAGGGAATCCCCTCATCTCCGTAGTACAGTCACTATTTCAAGGCCTAAGTACTGCCTTTACCCAGTCCCTCCTAGAAACCCCTTATGGGAACCCAGATTCACCTGATTACCATGCCCTTCGCATGCACAGGGACGTGCATACCGTTTAAGGCGGGAGGATGTAACCCAGGTTACTAAAGCTGACACCCTTTAGAGAAATTACCCCTAGTAAGTATTATAGATTATCAAGTCCTAACGAATaagatgaaaataataaaatattaattaattaaaatattaaagaactaaaaatataattaataggaATTTCTTTGTGAAttgaaattagaaaaaaaaagaactaaataattatttcagaaaatacttattttaaaaataaggcAACTATTTCTTTAAATCTGACCAGCAGTGGTAATAGGACAACCCCTATCGCGCCAATTTTATCCAGTAGAAACCCTGAAACAGATCACGCCACTATTTTAACCAATAGATAACTCTGAAGCAGCCTACTGCGCGGGAAGaccaaccaatcagcagctTAGTAAGTTAGTCTAGTACCCCCTGTGTGGAAAACGCATTCACTCTTGAGTTGGAAGCTGAACCGTGCGGATCGCGGCACAGCTATCGCGCTGAGAATAGAAAGCTACGTTGAGATATAAGTACCTCATACGTGAGTAATGCTTATTAGCCATCGGTACTAACGCTAGACGGCTAACAAGCAGTTCGGTCGTGTAAACCGGCGAGAGGATTTGTAACAGAGACGGAGTTATTCCGAGCGGGGAGCGAGTCTGTACAGCGGATCGCTTCGTCATCGCCGAGGTGAGCCGAGTGTACCGCGGATCGCTTAGTCATCGCCGCGGTGAGCCGAGTCTTCACCGCGATCGCTTTGTCATCACCGCAAGGAGCCGATTCTTCGCTGTGAATCGTTTCGTCGCCCGAGCGGGAGCCGAGTCCTTGACGCGGATCCCAgactaacaaaaaataaaagaattccGGATCGGATTTGGCCAGTTTCCCTGGGGATGAATCTTACTGATCTGCTCTGACCTGCCGCCTGGGTGCGAGAGTCCAGTCGAGTGGGACACGAGCTGGCGAGCCACGGTCCACGGAACTTCGTACCCGAGCATTGATTCTGAGTATCCCATATTTTTGAGGTTGGACTGTTTTTTCCAACTACTCTGAGTGAGTTACACTGCGCTAAAACATAATAGACTGAAGTTCTCTAATCTCTAAAGGTTACTGGAAGCGCTAAACCTTCACTAGAGACTTTTATCTTGTTGAAATCCACAcctttactatattttttttattgaatttaattgaatgatTGGGTTGAATTCTTTTGAACTTAATTTACTgttgaatcatttatttttgttattttgttattttggttaattgtttggttatattattactgtgaaaCATTGGGAATCATTTATTCTGTTGGAAAAAGAAATCTGAGACTGAAAACtgtgtaaattatattatagaatAATATAAATACCATACTTACCTCTTAACCTGCAAAATAGACAATACCTACCTTAAATACTTACCATAATTCCctaattatacttaccttagATATTGATCCAAAACCCCTAACTTAAAACCtaaaataaggaaaagaaaCCGATGATTAAAAACCctaataaaacctaaaatactAACACTGAGGACTgagtaataaaatagtaaatactttctaaatatatatctataatattaTAAACGTCTAACACTGGgtattatgtaaaatatttatagaaagAGGGAAACAAAATTGATACATACCTCTTGGTGAATaccattgtttattatttgttttattgtgatactgtgttttctttgatcttttttttttttattttatttccttacCCCCTACCCTGTTTACCTATTGAGACCcctatttttaaagttttaatacaatttctgtaattttaccCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU137617 False 1279 lncRNA 0.41 3 8328448 8338479
XR_002650574.1 True 2500 lncRNA 0.39 2 8336457 8339269

Neighbor

gene id symbol gene type direction distance location
LOC103034778 LOC108437774 coding upstream 557920 7709299 ~ 7770528 (+)
LOC103044305 NA coding upstream 767521 7542340 ~ 7560927 (+)
pibf1 pibf1 coding upstream 789814 7469343 ~ 7538634 (+)
tpt1 tpt1,LOC107691594,LOC107567988,LOC107598740,LOC107654875 coding upstream 884953 7435630 ~ 7443495 (+)
LOC103041253 NA coding upstream 983384 7338167 ~ 7345064 (+)
LOC103023156 NA coding downstream 201725 8540994 ~ 8543564 (+)
LOC103024012 creb1a,LOC107757658,LOC107714305,LOC108437762,LOC107552236,LOC107691602 coding downstream 310851 8650120 ~ 8664508 (+)
LOC111193523 NA coding downstream 345635 8684904 ~ 8686520 (+)
LOC103036357 NA coding downstream 500805 8840074 ~ 8851853 (+)
serhl2 NA coding downstream 752891 9092160 ~ 9105524 (+)
G101895 NA non-coding upstream 136706 8190545 ~ 8191742 (+)
G101892 NA non-coding upstream 184461 8143677 ~ 8143987 (+)
G101889 NA non-coding upstream 200510 8105725 ~ 8127938 (+)
G101868 NA non-coding upstream 419475 7907507 ~ 7908973 (+)
G101863 NA non-coding upstream 478915 7849315 ~ 7849533 (+)
G101949 NA non-coding downstream 11160 8350429 ~ 8350698 (+)
G101954 NA non-coding downstream 77928 8417197 ~ 8417621 (+)
G101974 NA non-coding downstream 200213 8539482 ~ 8539717 (+)
G102004 NA non-coding downstream 278902 8618171 ~ 8618392 (+)
G102014 NA non-coding downstream 367149 8706418 ~ 8706877 (+)
LOC103042156 NA other upstream 935223 7384757 ~ 7393225 (+)
G101622 zc3h13 other upstream 1182108 7144802 ~ 7146340 (+)
LOC103032856 march9,LOC108435943 other upstream 1331002 6955319 ~ 6997446 (+)
G101452 NA other upstream 1920637 6282025 ~ 6407811 (+)
G102015 NA other downstream 375570 8714839 ~ 8719235 (+)
LOC103025691 NA other downstream 458476 8797745 ~ 8836081 (+)
trnar-ucu_1 NA other downstream 494571 8833840 ~ 8833931 (+)
G102411 LOC107747660 other downstream 2186408 10525677 ~ 10526160 (+)
LOC111193528 NA other downstream 2529308 10868577 ~ 10870156 (+)

Expression


Co-expression Network