Gene
RNA
| Item | Value |
|---|---|
| gene id | G52828 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 4217420 ~ 4231469 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU60172 | True | 5559 | TUCP | 0.40 | 21 | 4217420 | 4231469 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_04196309_04197268 | DNAJC28 | coding | downstream | 20152 | 4196309 ~ 4197268 (-) |
| CI01000009_04069741_04071278 | NA | coding | downstream | 145816 | 4069714 ~ 4071604 (-) |
| CI01000009_04015167_04016764 | NA | coding | downstream | 200583 | 4015005 ~ 4016837 (-) |
| CI01000009_03791699_03858262 | NCAM2 | coding | downstream | 358186 | 3790698 ~ 3859234 (-) |
| CI01000009_03770045_03770497 | NA | coding | downstream | 446923 | 3769910 ~ 3770497 (-) |
| CI01000009_04738315_04741396 | RALB.S, RALBA, RALB.L, RALB | coding | upstream | 506760 | 4738229 ~ 4742426 (-) |
| CI01000009_04778332_04780190 | NA | coding | upstream | 546584 | 4778053 ~ 4786216 (-) |
| CI01000009_04888729_04895882 | NA | coding | upstream | 656728 | 4888197 ~ 4896479 (-) |
| CI01000009_04976520_04987680 | NA | coding | upstream | 745017 | 4976486 ~ 4987707 (-) |
| CI01000009_05046374_05094978 | SEMA5B, SEMA5BA | coding | upstream | 814831 | 5046300 ~ 5095973 (-) |
| G52831 | NA | non-coding | downstream | 110050 | 4107147 ~ 4107370 (-) |
| G52773 | NA | non-coding | downstream | 153759 | 4063231 ~ 4063661 (-) |
| G52770 | NA | non-coding | downstream | 169159 | 4047823 ~ 4048261 (-) |
| G52743 | NA | non-coding | downstream | 473867 | 3743327 ~ 3743553 (-) |
| G52739 | NA | non-coding | downstream | 481281 | 3735823 ~ 3736139 (-) |
| G52878 | NA | non-coding | upstream | 49876 | 4281345 ~ 4281805 (-) |
| G52995 | NA | non-coding | upstream | 96017 | 4327486 ~ 4327685 (-) |
| G53002 | NA | non-coding | upstream | 128118 | 4359587 ~ 4479642 (-) |
| G53007 | NA | non-coding | upstream | 139953 | 4371422 ~ 4414015 (-) |
| G53048 | NA | non-coding | upstream | 248229 | 4479698 ~ 4512678 (-) |
| CI01000009_03261739_03262843 | NA | other | downstream | 955463 | 3261038 ~ 3262843 (-) |
| CI01000009_02885473_02893975 | NA | other | downstream | 1318013 | 2883688 ~ 2893975 (-) |
| G52410 | NA | other | downstream | 1654887 | 2551724 ~ 2562533 (-) |
| G52098 | NA | other | downstream | 2809793 | 1401932 ~ 1407627 (-) |
| G53515 | NA | other | upstream | 1270926 | 5502395 ~ 5505248 (-) |
| G55814 | NA | other | upstream | 4194352 | 8425821 ~ 8428012 (-) |
| CI01000009_08858198_08860555 | NA | other | upstream | 4626683 | 8856310 ~ 8860563 (-) |
| G59097 | NA | other | upstream | 8056748 | 12288217 ~ 12289518 (-) |
| CI01000009_13975122_13976026 | NA | other | upstream | 9743919 | 13975099 ~ 13978614 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | XLOC_037306 | atp1a1b | coding | NC_007120.7 | CM002893.2 | 35901554 ~ 35922201 (+) |
