G102809


Basic Information

Item Value
gene id G102809
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 11986586 ~ 11986889 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU138929
CTAAACCTATTAAAAAGCGTTTTTTGGCTGGACATTAAAGATAGTTATGGGGGGGGGACTTATTTTAATACTTGCGatttcacaaaaaacaataaatgagaatgtgtcccaatacttttgttcatatatactagtgcatcttaaattatatagatgtattacacacagagtgatctattatgACTTAAagccaataaaacccaaaatTCAGAAACtcagaatatttgaatattatataagaccaattggtacatttggcagtgtaggcagtgtgccaggtcctgctggaaaatgaaatctgact

Function

GO: NA

KEGG:

id description
ko04360 Axon guidance

RNA

RNA id representative length rna type GC content exon number start site end site
TU138929 True 304 lncRNA 0.33 1 11986586 11986889

Neighbor

gene id symbol gene type direction distance location
LOC103035965 sox1 coding upstream 352811 11631733 ~ 11633775 (+)
LOC103036596 arhgef7,arhgef7b,LOC107718510,LOC107567796,LOC107746262 coding upstream 536202 11404244 ~ 11450384 (+)
eif5b eif5b coding upstream 586580 11376489 ~ 11400006 (+)
lipt1 NA coding upstream 611267 11373667 ~ 11375319 (+)
pkn1 LOC108428230,LOC107603033,LOC107712223,LOC107561874,LOC107676851 coding upstream 713583 11197689 ~ 11273003 (+)
LOC111193615 mcf2l coding downstream 30 11986919 ~ 11996727 (+)
arl11 NA coding downstream 69221 12056110 ~ 12058454 (+)
LOC103032463 NA coding downstream 370141 12357030 ~ 12378962 (+)
cbr1 cbr1,LOC108428204,LOC107746284,LOC107692178 coding downstream 548391 12535280 ~ 12539566 (+)
LOC103025394 NA coding downstream 559445 12546334 ~ 12561111 (+)
G102804 NA non-coding upstream 207828 11771576 ~ 11778758 (+)
G102805 NA non-coding upstream 209600 11770771 ~ 11776986 (+)
G102671 NA non-coding upstream 271533 11714694 ~ 11715053 (+)
LOC111193531 NA non-coding upstream 314074 11590123 ~ 11672512 (+)
G102654 NA non-coding upstream 387082 11599063 ~ 11599504 (+)
G102810 NA non-coding downstream 74 11986963 ~ 11987199 (+)
G102822 rcbtb1,LOC107718354,LOC107603000 non-coding downstream 59337 12046226 ~ 12050713 (+)
G102816 NA non-coding downstream 76647 12063536 ~ 12067895 (+)
LOC103046989 NA non-coding downstream 139032 12125921 ~ 12127541 (+)
G102850 NA non-coding downstream 151605 12138494 ~ 12138702 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 691771 11274746 ~ 11294815 (+)
LOC111193528 NA other upstream 1116430 10868577 ~ 10870156 (+)
G102411 LOC107747660 other upstream 1460426 10525677 ~ 10526160 (+)
LOC103025691 NA other upstream 3150505 8797745 ~ 8836081 (+)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 13750 12000639 ~ 12024764 (+)
cryzl1 cryzl1 other downstream 496733 12483622 ~ 12522303 (+)
sh3pxd2a sh3pxd2a other downstream 864112 12851001 ~ 13032506 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other downstream 1942176 13929065 ~ 13935667 (+)
G103490 LOC106510829 other downstream 2273736 14260625 ~ 14261539 (+)

Expression


Co-expression Network