cab39l (cab39l,LOC107676861,LOC107718429)



Basic Information


Item Value
gene id cab39l
gene name cab39l,LOC107676861,LOC107718429
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12000639 ~ 12024764 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU138943
ctgctggagcacttagccgctaatgctaatgctaaattcTGTACTTCTGTACCTAAGCTTACTATACATaaacaaaagcgctttactcacccaaataaacagttttcaggagagaaatctgtgtagattaacatccagtgctcgttttactttaaaagaaagtcattttttattattatagttttgtttacttaacttagctttacttagttAGCTAAGTTTTCATTGCTAGGAACAGGAGCCCTACCCAAAGGAAGCAGAAATGGAGGGCATGGCAGATAAAATAATCCTTGACCAGTCGACTGAATATGAAAAATACATAACAGATTTGTCTGTATCTTCATGTTCTAGCCATGTGTAGCTCTTCTATCAGCACCATTAGGAGCGCTGCATTTGCTCAGATAACCAACCTATTAAGTAAGTAGTaaaaaaaaatacttgggCACTTTCtctagtattttatttaattttattatatattttttcgttTCTTCCCCTTCTCTCAGTACTATAGTACACTATATAGATGCAGCTATAGTATTTTGGTAGTACTGTAGTGCATTCAGTAAGTGCTATAGTACTCTATAATCCTCCTATAGCAGGTTTAATAGCCTCCTATAGAAAGGATCCATGTCGTAGCCCACCTGCTATATAGTACGTTCTATTCTATCTTAATAATACTATTGTACAAACCTTTTACGTTCATTGACGAGTGATTTCTGTACTGTAGCGCGGTACTGTACTATAGTACTACTACAGTATTCCTCTGTTATCTGTTATTCTTCTTCAGTAGCCATTATTCTTTAGCTAGTTCTACATTGTGATTATGATTCATGATTAATGATTCTGGCAGACGAGACAGCATCGATTAGGATCTAAGCTGATACGATACACAGTCGAGTCGAGGACACGGacgtataaatatatatatatataaaacaaaaaaaaacaggtgccttttgttgtgttttaattgtatttctttttttcttttcccttgttcttttgtattttataaaaaacaagatCTTTCTTAGGGGGAGCttaatttcattgtttttttttttgttattaatttttaagAGATATGTTCTAGTGGAGCATATTTGAATCGATTAAGCAGTGAACCTCTTTAATAACTCACTATATTTGAGTTACGCTGATGAAGAcagtcaaactttttttttttctctttttactctttttttttttactttcattctTTGCAGCTGCAGTTGATTTATTGATTCAGTTGTATGATGATTTGTCTGTGACCTAACCATTAGAGTAGGCCGATCAAGTGATCAAGTGCGAGGGGAAATGTATGCTGAGGTGGTCTTTGACCCGTGTTATCACACATAACCTGCCAATTATGTGAAAAATTAatgttatgtttatatataatatatatatatatatgctgatcTTTCCATTTTTATGGTTTTCTCTGaattttgaagagtttgatCACGACAGATTTGTCCgagcaaacagacaaacaaacgaaatgaaagtaaagtaaaatgaacttcaCGAAATTCATCGGGAAGCACTTCCCCAGTTCATTCATTGCCAAATCTTTATTGAGGATGAAGAAATCCAAACCGTCGCACAGTCTGTTTGCTTCCCTTCCTCGCGGTTTCAATCTGCATTAATAGCTCAGATCGGGTGCAGGCTTTTTCAGTATTgcgcaaaaaataaaaataagaagtcAGCCATGGAAAACATGTCAGCCCTTCAGCAGGGGAACCATTTAAATATAGtagtaatatataaaacagcatCTGAGCCAAATTTATCCAGTATCTTCACACCCTCATATGTAACAAAGAAATTACAGTCAAAAAACGAAATCAAGATGAGCTACCATATCGAAACTGATATCGTTTCCCATGCCACACATGGTTGCATCCTTCCTTCTTAAATGCTAATTGTACCATATCACCAATAAAGGAAAATTCAAg
>XM_022674707.1
acacacgcacagacagacactgctgctgctgctgttggcgTGATCAGAGAAAGGGCTATAACGCTGGGTTGGTTAGCTAGCAGTCTATCTctctagctgtctgtctgtcggaCTGGGAGGGGAAGAGAGACGGAATCAGCACTAtaataacagcagcagctgccgAGCCTCGCCTGACTGTTctgaagagtgagagagaaagagtgagaaagagagagagagagagcgggacaGAGCGCGAGACTCTAGGCCACAACCATGCCACTGTTTGGTAAATCCCACAAGAGTCCTACGGACATTGTGAAGGCCCTCAAGGATAACCTGTCCATTCTGGTCAAGCAGGACAAGAAGACCGAGAAGGCATCAGAGGAGGTGTCTAAATGTCTGGTTGCGATGAAAGAGATCCTGTACGGCACCAATGACAAAGAGCCACATACGGAGACGGTGGCCCAGCTGGCCCAAGAGCTGTACAACAGCGGCCTGCTCATTTCACTGGTGGAGAACCTGCAGGTCATCGACTTCGAGGGTAAGAAGGACGTGTGCCAGATCTTTAACAACATCCTGCGCAGGCAGATCGGCACCCGCAGCCCCACAGTGGAATACTTCTGCTCCCATCAGGAAGTGCTCTTCATCCTGCTCAAAGGGTATGAGACTGCTCAGGTGGCTCTGAACTGTGGCATCATGCTGCGCGAGTGCATCCGGCACGAACCGCTCGCCAAAATCATCCTGCACTCTGAGCACTTCAATGACTTCTTCAGCTACGTAGAGATGTCCACATTCGACATAGCCTCAGACGCTTTCGCTACCTTcaagGATCTTCTCACAAGACACAAGGTTCTAGTGGCAGAATATTTAGAACAGAACTACGATGCAgTCTTTGAGAACTACGAGAAGCTGCTGCACTCTGAAAACTATGTGACGAAGAGGCAGTCATTGAAGCTATTGGGAGAGCTCCTCTTGGACAGACACAATTTCACTGTGATGACACGGTACATCAGCAAGCCGGAGAATCTCAAGCTCATGATGAATCTACTGAGAGACAAAAGCCCCAACATCCAGTTCGAGGCGTTCCACGTCTTCAAGGTGTTTGTGGCCAACCCGAACAAGACGCAGCCGATCGTAGACATCCTTCTGAAGAACCAGACGAAACTCATCGACTTCCTTAGCAACTTCCAGAAGGACCGCACGGACGACGAACAGTTTAACGATGAAAAGACGTACCTCATCAAACAGATACGAGACTTAAAGAAGCCCGCCTCCTAAACCTTAGCTAGCACTCGCGTTATTAAGCACCTCATCTTTTTACTgaggaaaaacaaatgaaaaaaaatcacaaaaatctATTAACAGTAATAATTCTATTTAAAATCTTCAAACATTTGTCTTTTCTTAGTCACGAAGCTCGCGAATGATAGTTTTCCATCACTGACAGTTCaattac
>XM_022674708.1
ATGCCACTGTTTGGTAAATCCCACAAGAGTCCTACGGACATTGTGAAGGCCCTCAAGGATAACCTGTCCATTCTGGTCAAGCAGGACAAGAAGACCGAGAAGGCATCAGAGGAGGTGTCTAAATGTCTGGTTGCGATGAAAGAGATCCTGTACGGCACCAATGACAAAGAGCCACATACGGAGACGGTGGCCCAGCTGGCCCAAGAGCTGTACAACAGCGGCCTGCTCATTTCACTGGTGGAGAACCTGCAGGTCATCGACTTCGAGGGTAAGAAGGACGTGTGCCAGATCTTTAACAACATCCTGCGCAGGCAGATCGGCACCCGCAGCCCCACAGTGGAATACTTCTGCTCCCATCAGGAAGTGCTCTTCATCCTGCTCAAAGGGTATGAGACTGCTCAGGTGGCTCTGAACTGTGGCATCATGCTGCGCGAGTGCATCCGGCACGAACCGCTCGCCAAAATCATCCTGCACTCTGAGCACTTCAATGACTTCTTCAGCTACGTAGAGATGTCCACATTCGACATAGCCTCAGACGCTTTCGCTACCTTcaagGATCTTCTCACAAGACACAAGGTTCTAGTGGCAGAATATTTAGAACAGAACTACGATGCAgTCTTTGAGAACTACGAGAAGCTGCTGCACTCTGAAAACTATGTGACGAAGAGGCAGTCATTGAAGCTATTGGGAGAGCTCCTCTTGGACAGACACAATTTCACTGTGATGACACGGTACATCAGCAAGCCGGAGAATCTCAAGCTCATGATGAATCTACTGAGAGACAAAAGCCCCAACATCCAGTTCGAGGCGTTCCACGTCTTCAAGGTGTTTGTGGCCAACCCGAACAAGACGCAGCCGATCGTAGACATCCTTCTGAAGAACCAGACGAAACTCATCGACTTCCTTAGCAACTTCCAGAAGGACCGCACGGACGACGAACAGTTTAACGATGAAAAGACGTACCTCATCAAACAGATACGAGACTTAAAGAAGCCCGCCTCCTAAACCTTAGCTAGCACTCGCGTTATTAAGCACCTCATCTTTTTACTgaggaaaaacaaatgaaaaaaaatcacaaaaatctATTAACAGTAATAATTCTATTTAAAATCTTCAAACATTTGTCTTTTCTTAGTCACGAAGCTCGCGAATGATAGTTTTCCATCACTGACAGTTCaattacttttcttttcttttttctttccacttTCTTTCATAAACATTTTTCGTTTGTGTGCCACAATagggtgtttaaaaaaaatcataaaacaacGTAAAACGTAAAAGCAACCAATTTTGTTTCAGGAAGAACCAAAGGTTGTAGTAACCTCAATATAGAAGAAGTGCGTGAGTCAGGACCTAAGAGAACGCTTCACacttattatttctttttctttttttaataatacattcagcttaatgttttgtataatcttattttttccacctTTACCACTCCAAATACTGTTATACACCCACAGGTCTGgcatgctaaagctaaagctgaagagaagagaggagagagctcTTGTACATTATGTAGATGATACCGGTAGTAGTGGACTTGTAGGAAGGGAGGTTGCATTCCCCAGTTATTTATAATGctctgatttttcttttttcttttctgagtTTAGAACTCGTTCTGTATTTAGAGACTTCGTTTCTgcattcctttttttcttctttttttttttatttgattttttcttCCTATACACTGATGCTGTTTAGCTTTTTCCCTTTTCTCCTGCACCTGTATGGCTTACTGCTGACTCGGAATTTTTGTTTTGACttcaaaagaaatatatatactgaTCATGTAATCcctttttagtgttttaaaaaatatatgtttaaggAATGAAGATTTGATTTGACCagtattctttttattattattataattattattattgttattaggtTTCTGCCATAAAATTGAAGCGCAGTTAATCTTAATGTGTGCTTAAGTAATATATAGACCTAACTACTACTAAATTAATAAGAAAaagtcttttttctttctttaagttATCGATTATGTTTGCGAAACAAAAACAGGGCGTgtaatcttcttcttcttattgctattttcttttttttcattttctacttGACATGTTTACCCATCATGTGTTTAAAGGCTGAAAGTGGGTGCCATGTTagtaagtagaaaaaaaaatacttgggCACTTTCtctagtattttatttaattttattatatattttttcgttTCTTCCCCTTCTCTCAGTACTATAGTACACTATATAGATGCAGCTATAGTATTTTGGTAGTACTGTAGTGCATTCAGTAAGTGCTATAGTACTCTATAATCCTCCTATAGCAGGTTTAATAGCCTCCTATAGAAAGGATCCATGTCGTAGCCCACCTGCTATATAGTACGTTCTATTCTATCTTAATAATACTATTGTACAAACCTTTTACGTTCATTGACGAGTGATTTCTGTACTGTAGCGCGGTACTGTACTATAGTACTACTACAGTATTCCTCTGTTATCTGTTATTCTTCTTCAGTAGCCATTATTCTTTAGCTAGTTCTACATTGTGATTATGATTCATGATTAATGATTCTGGCAGACGAGACAGCATCGATTAGGATCTAAGCTGATACGATACACAGTCGAGTCGAGGACACGGacgtataaatatatatatatataaaacaaaaaaaaacaggtgccttttgttgtgttttaattgtatttctttttttcttttcccttgttcttttgtattttataaaaaacaagatCTTTCTTAGGGGGAGCttaatttcattgtttttttttttgttattaatttttaagAGATATGTTCTAGTGGAGCATATTTGAATCGATTAAGCAGTGAACCTCTTTAATAACTCACTATATTTGAGTTACGCTGATGAAGAcagtcaaactttttttttttctctttttactctttttttttttactttcattctTTGCAGCTGCAGTTGATTTATTGATTCAGTTGTATGATGATTTGTCTGTGACCTAACCATTAGAGTAGGCCGATCAAGTGATCAAGTGCGAGGGGAAATGTATGCTGAGGTGGTCTTTGACCCGTGTTATCACACATAACCTGCCAATTATGTGAAAAATTAatgttatgtttatatataatatatatatatatatgctgatcTTTCCATTTTTATGGTTTTCTCTGaattttgaagagtttgatCACGACAGATTTGTCCgagcaaacagacaaacaaacgaaatgaaagtaaagtaaaatgaacttcaCGAAATTCATCGGGAAGCACTTCCCCAGTTCATTCATTGCCAAATCTTTATTGAGGATGAAGAAATCCAAACCGTCGCACAGTCTGTTTGCTTCCCTTCCTCGCGGTTTCAATCTGCATTAATAGCTCAGATCGGGTGCAGGCTTTTTCAGTATTgcgcaaaaaataaaaataagaagtcAGCCATGGAAAACATGTCAGCCCTTCAGCAGGGGAACCATTTAAATATAGtagtaatatataaaacagcatCTGAGCCAAATTTATCCAGTATCTTCACACCCTCATATGTAACAAAGAAATTACAGTCAAAAAACGAAATCAAGATGAGCTACCATATCGAAACTGATATCGTTTCCCATGCCACACATGGTTGCATCCTTCCTTCTTAAATGCTAATTGTACCATATCACCAATAAAGGAAAATTCAAgcattaa

Function


symbol description
cab39l Predicted to enable protein serine/threonine kinase activator activity. Predicted to be involved in intracellular signal transduction. Orthologous to human CAB39L (calcium binding protein 39 like).

NR:

description
calcium-binding protein 39-like

GO: NA

KEGG:

id description
K08272 CAB39, MO25; calcium binding protein 39

RNA


RNA id representative length rna type GC content exon number start site end site
TU138943 False 1964 lncRNA 0.34 2 12009277 12024758
XM_022674707.1 False 1441 mRNA 0.49 9 12000639 12022227
XM_022674708.1 True 3720 mRNA 0.37 8 12011234 12024764

Neighbor


gene id symbol gene type direction distance location
LOC111193615 mcf2l coding upstream 3912 11986919 ~ 11996727 (+)
LOC103035965 sox1 coding upstream 366864 11631733 ~ 11633775 (+)
LOC103036596 arhgef7,arhgef7b,LOC107718510,LOC107567796,LOC107746262 coding upstream 550255 11404244 ~ 11450384 (+)
eif5b eif5b coding upstream 600633 11376489 ~ 11400006 (+)
lipt1 NA coding upstream 625320 11373667 ~ 11375319 (+)
arl11 NA coding downstream 31346 12056110 ~ 12058454 (+)
LOC103032463 NA coding downstream 332266 12357030 ~ 12378962 (+)
cbr1 cbr1,LOC108428204,LOC107746284,LOC107692178 coding downstream 510516 12535280 ~ 12539566 (+)
LOC103025394 NA coding downstream 521570 12546334 ~ 12561111 (+)
bcl9 bcl9,LOC107676875,LOC107746055,LOC107746285 coding downstream 543815 12568579 ~ 12733197 (+)
G102810 NA non-coding upstream 13440 11986963 ~ 11987199 (+)
G102809 NA non-coding upstream 13750 11986586 ~ 11986889 (+)
G102804 NA non-coding upstream 221881 11771576 ~ 11778758 (+)
G102805 NA non-coding upstream 223653 11770771 ~ 11776986 (+)
G102671 NA non-coding upstream 285586 11714694 ~ 11715053 (+)
G102822 rcbtb1,LOC107718354,LOC107603000 non-coding downstream 21462 12046226 ~ 12050713 (+)
G102816 NA non-coding downstream 38772 12063536 ~ 12067895 (+)
LOC103046989 NA non-coding downstream 101157 12125921 ~ 12127541 (+)
G102850 NA non-coding downstream 113730 12138494 ~ 12138702 (+)
LOC111193532 NA non-coding downstream 120125 12144889 ~ 12194777 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 705824 11274746 ~ 11294815 (+)
LOC111193528 NA other upstream 1130483 10868577 ~ 10870156 (+)
G102411 LOC107747660 other upstream 1474479 10525677 ~ 10526160 (+)
LOC103025691 NA other upstream 3164558 8797745 ~ 8836081 (+)
trnar-ucu_1 NA other upstream 3166708 8833840 ~ 8833931 (+)
cryzl1 cryzl1 other downstream 458858 12483622 ~ 12522303 (+)
sh3pxd2a sh3pxd2a other downstream 826237 12851001 ~ 13032506 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other downstream 1904301 13929065 ~ 13935667 (+)
G103490 LOC106510829 other downstream 2235861 14260625 ~ 14261539 (+)
G103551 NA other downstream 2593871 14618635 ~ 14619082 (+)

Expression



Co-expression Network