G102822 (rcbtb1,LOC107718354,LOC107603000)


Basic Information

Item Value
gene id G102822
gene name rcbtb1,LOC107718354,LOC107603000
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12046226 ~ 12050713 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU138954
CTTTCAGTTCACAGTTTCGGCTGCAGCAGTCTGAGAAAAGCCATTACAGGTTTATTTTTACCTCCCCGTTGTCTGACACAGCCATGGAGGAGGTCTGCCCGCAGGCTATGCTGACCACAGCTTTGTTCTGGAGGCAGTTGGAAACTTTTCGTGGCGTGGGCTGGTTCGCAGTGGAGCCCGAACCAACTTGACCACAGTTATTATAGCCCCAGGCGAACACCTCCCCATCGTGGGTCAGGGCAAGTGAGTGGTGAGACCCACAGGCGACCTCAATAACCCTCTTGTTCTGCAGGTTAGTGGACACAAGCACTGGACACACTCCCTGATTGGTTGTTCCATTTCCCAGCTGACTGTAGCCATTGTGTCCCCATGCATACATATCCCCCTCCTCTGTAGCGAGAAGCACGTGTGGCCCACTGCCATAACTGAGACTGACCACCTTCTTCCCACTCAAGCCGTCCAGTTTCCTGGGCACAATAGTACTCTGACTGTCCCCTGTCCCCAAACAGTTACTGCAGTTCAGCCCAAACACATATACCTCATCATCATGGGTGATATAGATGGCCTCATTGGCGGACGTTCCAAAGACACACGCTTGCCTTACAGAGGCGATCTCCTGAGCGCTCATCAGGGTGAAGAGAGGCCATTTGCTCACGTCCACCATGGCTACACTAATGATGCTCCGAGGGAAGGGGGAAATAGACTTGGGGATGGGGGCAGTGGCAGTGCTCCTACCAGGTGATGCACTGCAACTACTGGCACTGCTGATACTGGACACAGACATACACCCATAGGCAAAACATGTTATAGGcattata

Function

symbol description
rcbtb1 Acts upstream of or within blood vessel development and retina vasculature development in camera-type eye. Orthologous to human RCBTB1 (RCC1 and BTB domain containing protein 1).

NR:

description
PREDICTED: RCC1 and BTB domain-containing protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU138954 True 818 lncRNA 0.53 4 12046226 12050713

Neighbor

gene id symbol gene type direction distance location
LOC111193615 mcf2l coding upstream 49499 11986919 ~ 11996727 (+)
LOC103035965 sox1 coding upstream 412451 11631733 ~ 11633775 (+)
LOC103036596 arhgef7,arhgef7b,LOC107718510,LOC107567796,LOC107746262 coding upstream 595842 11404244 ~ 11450384 (+)
eif5b eif5b coding upstream 646220 11376489 ~ 11400006 (+)
lipt1 NA coding upstream 670907 11373667 ~ 11375319 (+)
arl11 NA coding downstream 5397 12056110 ~ 12058454 (+)
LOC103032463 NA coding downstream 306317 12357030 ~ 12378962 (+)
cbr1 cbr1,LOC108428204,LOC107746284,LOC107692178 coding downstream 484567 12535280 ~ 12539566 (+)
LOC103025394 NA coding downstream 495621 12546334 ~ 12561111 (+)
bcl9 bcl9,LOC107676875,LOC107746055,LOC107746285 coding downstream 517866 12568579 ~ 12733197 (+)
G102810 NA non-coding upstream 59027 11986963 ~ 11987199 (+)
G102809 NA non-coding upstream 59337 11986586 ~ 11986889 (+)
G102804 NA non-coding upstream 267468 11771576 ~ 11778758 (+)
G102805 NA non-coding upstream 269240 11770771 ~ 11776986 (+)
G102671 NA non-coding upstream 331173 11714694 ~ 11715053 (+)
G102816 NA non-coding downstream 12823 12063536 ~ 12067895 (+)
LOC103046989 NA non-coding downstream 75208 12125921 ~ 12127541 (+)
G102850 NA non-coding downstream 87781 12138494 ~ 12138702 (+)
LOC111193532 NA non-coding downstream 94176 12144889 ~ 12194777 (+)
G102888 NA non-coding downstream 219235 12269948 ~ 12270255 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 21462 12000639 ~ 12024764 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 751411 11274746 ~ 11294815 (+)
LOC111193528 NA other upstream 1176070 10868577 ~ 10870156 (+)
G102411 LOC107747660 other upstream 1520066 10525677 ~ 10526160 (+)
LOC103025691 NA other upstream 3210145 8797745 ~ 8836081 (+)
cryzl1 cryzl1 other downstream 432909 12483622 ~ 12522303 (+)
sh3pxd2a sh3pxd2a other downstream 800288 12851001 ~ 13032506 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other downstream 1878352 13929065 ~ 13935667 (+)
G103490 LOC106510829 other downstream 2209912 14260625 ~ 14261539 (+)
G103551 NA other downstream 2567922 14618635 ~ 14619082 (+)

Expression


Co-expression Network