LOC111193532


Basic Information

Item Value
gene id LOC111193532
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12144889 ~ 12194777 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU138998
GCCGCCCCCAGCCCGCCTGTGCATGCCGGGAACATGGACTTGCTGAGTGGTTTGAAGGTGGAAAgacactttttcacacttttttcgAAGCGCTTGTGCACCgctGTTTACCCACCCTTGCATCCCTCATCCAGCCCCTGGCCTACCACAGGCAGTGAGTGCAGCAAATCGCACAAAAACAGAAGCTATCGCAGAACAGAATCAACAATTATGGGCCAATCAAATCTCTGGGATCACAGAAGCTGTTCAGACTATTGTCACATCACACAAGAAGCCAACAGATGCTTATACAGCAAAATATAGCCTTGATGTGTCTAAGccatgtatttcttttttt
>XR_002650582.1
CTGTGCATGCCGGGAACATGGACTTGCTGAGTGGTTTGAAGGTGGAAAgacactttttcacacttttttcgAAGCGCTTGTGCACCGTTAAGCAATCATGAGAGTCACAGCACTGTTGGCATCACTGAGGGGAGCACCAACAACACTGAGGTGgctGTTTACCCACCCTTGCATCCCTCATCCAGCCCCTGGCCTACCACAGGCAGTGAGTGCAGCAAATCGCACAAAAACAGAAGCTATCGCAGAACAGAATCAACAATTATGGGCCAATCAAATCTCTGGGGTAAGCAATCACTCATATACACATACGTTAATGATAAAACCCTCTCGGACTGTGATCCGATGGAAGACAAGTTTCTATTGGGTTAAACGAGTCATAATGACTCTAAGGTAGCCTAAAGACCAGTCCTCTTTCCATGGAGTCAGTTTGTCTTGGATGTAGCTCTGTGCATGTGATGAGccactattttaaatgttaacatgtgtttttcataataatttCGTAGTAACTCAGGTTACTCAGGTGCATGATAGTTATATTTTGAGCTCACTGTTATTGTTTGCTAAGAGTCCTTATGACCTCtttacttactttttatttaccCTGATACAGTGATGATACAGTGTTAGTGGCCATTCAAATATTCTATCTATGCTTCTGCTGGGAGCATTCTCTGATATGATGCTTCTAACCTTCAGAAATATCGTACCTGCTGTTTAATTTTGGCTTTACCACCAAAAAATATACACTGTGGTAGCACATTTTGACATAGTTGTATAATTTTGACAAAACACTGGTTCGGTTCATGGACCGACAACGCTTCAGTTGTATGATTTGAGCATACTGTTATTATTTGCTTGAGagctaataaaaatgtattgacgatttttaaaaaaatcttcactGTTATTTACATATGAATTTACCTTATATTTACCCTGACAGTATAATGACaattaatgcaattaaataaaatatatttttatgtctgTTATCATTTATATTTACCCTGTTATAGTCATTTAGGCCATCCAAATATTCTATCTATATTTCTGTAAGGAGCATTTTCTGATCTAATGCTTTCAACCTGTAGAAATATCTTACCTTCTGTGTAATTTAAGCAGCCTtaccaataaatatatattgtgatagtaCAGTTTAATAAGGTAGCTCAAATAGGTTGTTCGTGGGCAGTGTACAGAGTGGGGAATCATACAGCTTACTGTAATTATTTGTGAGAGttcaaatgtaataaaatcCTATTACACTCAGTCACCTTATATTTACCCTGATATAGTGATTTAGGACTTCTGCTGGGTGCATTGTATGCTTCACTCTATGAGCATATCCTAtctaatggtttataaaggcaACTTTACAAGCAATAACCATAAATTGTGGTAACACGTTTTGACAAGGTTTGTGGGCTGTCTACAGATTGGAGAACAACGTCACAAGCAAATAATGACTGTAAGCTCTAATTAAGAGTCACAAAAATGTAGTGACtataagaattaaaaaatatattttacttatgACCTCAGTTACCTTCTCTTTAGCCTGATATAGTGATTTAGGATACACAAATGATCTACCTATACCTAACCCATACATATATTCAATCTTTAGAAAGATTCCTGCTGTTTATTTTAGACAGCTTCACAAATAAGTATACACTGTGGTCATACGGTTTGACAATGTATCACAATTCTGACAAAACACCAGTTTGTGGGCTGTCTACAGAGTGCAGAACAACAGGgcagcttattattattttttttacatcagttaccttatttttacatatatatatagtgattatataatattctgacaTACAAATATCATACTTATACTTTTGCTGGGAGCATACTATGCGTTTAGAATATCTAACACAATATCCTACctgctgtttaatttatttatcttcaCCAATAAATATACACTGTTGGTAGTAAGTTTTGACAAGACAGCACAAATTGACAAAACACTGGTTTGGTTCTTGGGCTGTCTACAGAGTGTAAAACAACGAGGTCACTAAAAAGTTTTAGTGTTACAATCTGAGCTTACTGTTATTATTTCCTTGAGTTACAAAAATGCAGTGatgattaaaatttttaaaataattttcttaagACCTAACTTAAATATCCTTTCTGCTGTTTAATTAAGACaactttacaaataaatacacactgcAGTCGTATGATTTGACAATGTAGCACAGTTTTGACAGAACACCAGTTTGTGGGCTGTCTACAGAGTGGACAACAACAGGGCCAATCTAAAAAGTGTCACTGATCTGTgcttactgttattatttttttcacattagttaccttatttttacatatatatactgATTTCTGACATACAAATATTCTATTAATACTTCTGCTGGGAGGTTTCTTTGCTTTCAGAATATCTAACAGAATATCCTACCTGCTGTTTACTTTATTTAGCTTCaccaatattaaatatacattgtGGTAGCAcgatttgacaaggtagcacaaatAGCACAAATCGATAGAAAACCGGTTCAGTTCATGGTCTGTCTAAAGTGGAGAACAACGAGGCCACTCTAAAAAAGTTTCAGCGTTACAATCTGAGCTTAATGTTACAAAAATGTAGTGACGATtagaatttaacatttttttttcttattaccTCAGTTACATTATCTTGACCCTGATATAGTAATTTAGGCTACACAAATTAACTGCATATATTTTACCTAAGTTAAATATCCTTCCTGCTGTTTAATTTAGACagctttacaaataaatacacattgcGGTTGTACAGTTTGACAatgtattacagtttttacagatCACCAGTTTGTGGGCTTTCTGCAGAGTGGAGAACAACAGGGACAATCTGAAAAGAGTCAGCGATACAATCTGAGCTTACTGTTATGATTTTTCATATCAGTTACCTTATTTTAACCCTTATATAGTGATTTCTGCTACCtgctgtttcatttatttatcttcaACAATAAATGTATACTGTGGTAGTACGTTTTGAAAAGGTAGCACAAATTGACAAATCACCAGTTCAGTTCGTGGGCTGTCTACGGAGTGTAGAACAACAAGGCCACTGTAAAAAATTTCAGTGTTACAAACCAAGTTATAATTTTCTTATAACCTCAGTTATCTTCTCCTTTCCCTGATATAGTAGTTTAGGCCACAAAAATGATCTTCTTCtgttaaaaataacttaaatatcCTTCCTGCTACTGAATTTAGACagctttacaaataaatatacacagtGGTAGTAAAGTCTGACCTTGTAGCACAATTGTGACAGAACACTAGTTTGTGGGCTGTCTACATTGTGGAGAACATCATCAGTTTATATCAGTTACCttaatacacagctctggaaacaattaagagaccacttcagtttctgaatcagtttctctgattgtgctatttacaggtatatgattgtgtaaaatgaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU138998 False 337 lncRNA 0.48 3 12144889 12194777
XR_002650582.1 True 3478 lncRNA 0.35 3 12144905 12160608

Neighbor

gene id symbol gene type direction distance location
arl11 NA coding upstream 86435 12056110 ~ 12058454 (+)
LOC111193615 mcf2l coding upstream 148162 11986919 ~ 11996727 (+)
LOC103035965 sox1 coding upstream 511114 11631733 ~ 11633775 (+)
LOC103036596 arhgef7,arhgef7b,LOC107718510,LOC107567796,LOC107746262 coding upstream 694505 11404244 ~ 11450384 (+)
eif5b eif5b coding upstream 744883 11376489 ~ 11400006 (+)
LOC103032463 NA coding downstream 162253 12357030 ~ 12378962 (+)
cbr1 cbr1,LOC108428204,LOC107746284,LOC107692178 coding downstream 340503 12535280 ~ 12539566 (+)
LOC103025394 NA coding downstream 351557 12546334 ~ 12561111 (+)
bcl9 bcl9,LOC107676875,LOC107746055,LOC107746285 coding downstream 373802 12568579 ~ 12733197 (+)
LOC103027506 gja8,LOC108258942,LOC107603011,LOC107566539,LOC107746070 coding downstream 567489 12762266 ~ 12767170 (+)
G102850 NA non-coding upstream 6187 12138494 ~ 12138702 (+)
LOC103046989 NA non-coding upstream 17348 12125921 ~ 12127541 (+)
G102816 NA non-coding upstream 76994 12063536 ~ 12067895 (+)
G102822 rcbtb1,LOC107718354,LOC107603000 non-coding upstream 94176 12046226 ~ 12050713 (+)
G102810 NA non-coding upstream 157690 11986963 ~ 11987199 (+)
G102888 NA non-coding downstream 75171 12269948 ~ 12270255 (+)
G102889 NA non-coding downstream 79012 12273789 ~ 12279012 (+)
G102891 agpat3,LOC107746273,LOC107676863 non-coding downstream 88727 12283504 ~ 12287736 (+)
G102900 NA non-coding downstream 116447 12311224 ~ 12314024 (+)
G102901 pdxkb,LOC108428208,LOC103021965,LOC102792432,LOC106527750,LOC107376125,LOC108247466,LOC107676865 non-coding downstream 124235 12319012 ~ 12323584 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 120125 12000639 ~ 12024764 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 850074 11274746 ~ 11294815 (+)
LOC111193528 NA other upstream 1274733 10868577 ~ 10870156 (+)
G102411 LOC107747660 other upstream 1618729 10525677 ~ 10526160 (+)
trnar-ucu_1 NA other upstream 3310958 8833840 ~ 8833931 (+)
cryzl1 cryzl1 other downstream 288845 12483622 ~ 12522303 (+)
sh3pxd2a sh3pxd2a other downstream 656224 12851001 ~ 13032506 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other downstream 1734288 13929065 ~ 13935667 (+)
G103490 LOC106510829 other downstream 2065848 14260625 ~ 14261539 (+)
G103551 NA other downstream 2423858 14618635 ~ 14619082 (+)

Expression


Co-expression Network