G102891 (agpat3,LOC107746273,LOC107676863)


Basic Information

Item Value
gene id G102891
gene name agpat3,LOC107746273,LOC107676863
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12283504 ~ 12287736 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU139041
CTGACACTCATGTCAGCTTTGTATTTCTTGCCACTGACGAGGCCTAGCAGGGTGGGGTTCTCCTTATCTTTGAAGTTCAGCGTTACATCGTATACTGCTTTTACTGTTCCCTTGAGGCATTGCATGGTGGTGGTGAAGCCCTTGGTGCGTGGCAGTAGGTGGTATTTGAGCTTTGGCAGGCCTTTGCTCTCGGCCACCTGCATACTGATCTGGTGCTTCTTCTCTGTGAAACGTGTTCCCTCACAGTAGAGCAGAAACCACATATACTCTGGGTAATCTCTGAGTTGGTGGAGCCCTTTAAACACCGTATCCCTGTCCTCCTCCCACTTCCTCTTACAGAACACGATCTCCAGGAAGTACCaggtccagccaatcagaggcactTTCAGCAGCTCGTGCTTCGCCAGCACCTTAGAGCTCCCTAACACGCCGTATCGTTCACACATGGTCCAGCCGCACAAGAAATCAATTTCAAAGTTGTggttgaggatgatgatgacATGCTCTTTGCCAAACATATCCACCGTGGCCTGGTCAGTGTACAGCGTGCAATCTGTCCCCGACCACCATTCTAAAAGCATCACCAACTCTGTAAATTAATGAAGAGAgcattattaaatatacattattagaATATGTCTTTAAAGTAAGTATAGcatctttgcattttgcaatgGTTTCAGAACAAAACAAGAGAGA

Function

symbol description
agpat3 Predicted to enable 1-acylglycerol-3-phosphate O-acyltransferase activity. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in central nervous system; digestive system; optic vesicle; pronephric duct; and visual system. Orthologous to human AGPAT3 (1-acylglycerol-3-phosphate O-acyltransferase 3).

NR:

description
1-acyl-sn-glycerol-3-phosphate acyltransferase gamma

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139041 True 699 lncRNA 0.47 4 12283504 12287736

Neighbor

gene id symbol gene type direction distance location
arl11 NA coding upstream 225050 12056110 ~ 12058454 (+)
LOC111193615 mcf2l coding upstream 286777 11986919 ~ 11996727 (+)
LOC103035965 sox1 coding upstream 649729 11631733 ~ 11633775 (+)
LOC103036596 arhgef7,arhgef7b,LOC107718510,LOC107567796,LOC107746262 coding upstream 833120 11404244 ~ 11450384 (+)
eif5b eif5b coding upstream 883498 11376489 ~ 11400006 (+)
LOC103032463 NA coding downstream 69294 12357030 ~ 12378962 (+)
cbr1 cbr1,LOC108428204,LOC107746284,LOC107692178 coding downstream 247544 12535280 ~ 12539566 (+)
LOC103025394 NA coding downstream 258598 12546334 ~ 12561111 (+)
bcl9 bcl9,LOC107676875,LOC107746055,LOC107746285 coding downstream 280843 12568579 ~ 12733197 (+)
LOC103027506 gja8,LOC108258942,LOC107603011,LOC107566539,LOC107746070 coding downstream 474530 12762266 ~ 12767170 (+)
G102889 NA non-coding upstream 4492 12273789 ~ 12279012 (+)
G102888 NA non-coding upstream 13249 12269948 ~ 12270255 (+)
LOC111193532 NA non-coding upstream 88727 12144889 ~ 12194777 (+)
G102850 NA non-coding upstream 144802 12138494 ~ 12138702 (+)
LOC103046989 NA non-coding upstream 155963 12125921 ~ 12127541 (+)
G102900 NA non-coding downstream 23488 12311224 ~ 12314024 (+)
G102901 pdxkb,LOC108428208,LOC103021965,LOC102792432,LOC106527750,LOC107376125,LOC108247466,LOC107676865 non-coding downstream 31276 12319012 ~ 12323584 (+)
G102907 NA non-coding downstream 78514 12366250 ~ 12368274 (+)
G102902 NA non-coding downstream 91355 12379091 ~ 12402254 (+)
G102916 NA non-coding downstream 126430 12414166 ~ 12414973 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 258740 12000639 ~ 12024764 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 988689 11274746 ~ 11294815 (+)
LOC111193528 NA other upstream 1413348 10868577 ~ 10870156 (+)
G102411 LOC107747660 other upstream 1757344 10525677 ~ 10526160 (+)
trnar-ucu_1 NA other upstream 3449573 8833840 ~ 8833931 (+)
cryzl1 cryzl1 other downstream 195886 12483622 ~ 12522303 (+)
sh3pxd2a sh3pxd2a other downstream 563265 12851001 ~ 13032506 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other downstream 1641329 13929065 ~ 13935667 (+)
G103490 LOC106510829 other downstream 1972889 14260625 ~ 14261539 (+)
G103551 NA other downstream 2330899 14618635 ~ 14619082 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000119_01640048_01644501 AGPAT3 coding CI01000119 null 1639311 ~ 1644820 (+)