G102907


Basic Information

Item Value
gene id G102907
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12366250 ~ 12368274 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU139071
cactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaatgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacttggaaaacattagcaactgcctagcaaccacttagcaactgctagcaaccacctggaatacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaacaacttagcaactgcctagcaaccacttggaaaatgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactggcctagcaaccacttaggcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaatgttagcaactacctagcaaccacttagcaaccacctggaaaatgttagcaactgcctagcaaccagttagcaacaccttagcaaccacctggaaaacgttagcaact
>TU139072
agcaaccagttagcaacaccttagcaaccacctggaaaacgttagaaacagcctagcaacagcttagcaaccactttagaaattatagcaactgcctagcaaccagttagcaacaccttagcaaccaccaggaaaacgttagaaacagcctagcaacagcttagcaaccacattagaaacaatagcaactgcctaacaaccacttagcaacaccttagcaaccactaggaaaacgtaagcaactgcttagcaaccacttagcaaccacttagcaaccatgtgtaATACATTAGCAAATAACTatcaaccactgagcaacagcttagcaaccacctgtaagacgttagcaactgcctagcaaccactttcaAGATTTTAGCATTtatccaaatgtttttagatttcagggtttaaccaaacatttttagttttcagcgtttaaccacaCATTTTTAGATTTCCGTGTTTTTGGCATTTAGcgt
>TU139073
cactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaatgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaacaacttagcaactgcctagcaaccacttggaaaatgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactggcctagcaaccacttaggcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaatgttagcaactacctagcaaccacttagcaaccacctggaaaatgttagcaactgcctagcaaccagttagcaacaccttagcaaccacctggaaaacgttagcaact
>TU139075
agcaaccacttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaattatagcaactgcctagcaaccagttagcaacaccttagcaaccaccaggaaaacgttagaaacagcctagcaacagcttagcaaccacattagaaacaatagcaactgcctaacaaccacttagcaacaccttagcaaccactaggaaaacgtaagcaactgcttagcaaccacttagcaaccacttagcaaccatgtgtaATACATTAGCAAATAACTatcaaccactgagcaacagcttagcaaccacctgtaagacgttagcaactgcctagcaaccactttcaAGATTTTAGCATTtatccaaatgtttttagatttcagggtttaaccaaacatttttagttttcagcgtttaaccacaCATTTTTAGATTTCCGTGTTTTTGGCATTTAGcgt
>TU139076
cactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaatgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaacaacttagcaactgcctagcaaccacttggaaaatgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactggcctagcaaccacttaggcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaatgttagcaactacctagcaaccacttagcaaccacctggaaaatgttagcaactgcctagcaaccagttagcaacaccttagcaaccacctggaaaacgttagcaact
>TU139080
gcctagcaaccacttagcaaccactttagaaattatagcaactgcctagcaaccacttagcaacaccttagcaaccaccaggaaaacgttagaaacagcctagcaacagcttagcaaccacattagaaacaatagcaactgcctaacaaccacttagcaacaccttagcaaccactaggaaaacgtaagcaactgcttagcaaccacttagcaaccacttagcaaccatgtgtaATACATTAGCAAATAACTatcaaccactgagcaacagcttagcaaccacctgtaagacgttagcaactgcctagcaaccactttcaAGATTTTAGCATTtatccaaatgtttttagatttcagggtttaaccaaacatttttagttttcagcgtttaaccacaCATTTTTAGATTTCCGTGTTTTTGGCATTTAGcgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139071 True 781 lncRNA 0.48 2 12366250 12367074
TU139072 False 482 lncRNA 0.40 3 12367512 12368274
TU139073 False 631 lncRNA 0.48 2 12366250 12367074
TU139075 False 459 lncRNA 0.41 3 12367415 12368274
TU139076 False 588 lncRNA 0.48 2 12366250 12367074
TU139080 False 432 lncRNA 0.40 2 12367302 12368274

Neighbor

gene id symbol gene type direction distance location
arl11 NA coding upstream 307796 12056110 ~ 12058454 (+)
LOC111193615 mcf2l coding upstream 369523 11986919 ~ 11996727 (+)
LOC103035965 sox1 coding upstream 732475 11631733 ~ 11633775 (+)
LOC103036596 arhgef7,arhgef7b,LOC107718510,LOC107567796,LOC107746262 coding upstream 915866 11404244 ~ 11450384 (+)
eif5b eif5b coding upstream 966244 11376489 ~ 11400006 (+)
cbr1 cbr1,LOC108428204,LOC107746284,LOC107692178 coding downstream 167006 12535280 ~ 12539566 (+)
LOC103025394 NA coding downstream 178060 12546334 ~ 12561111 (+)
bcl9 bcl9,LOC107676875,LOC107746055,LOC107746285 coding downstream 200305 12568579 ~ 12733197 (+)
LOC103027506 gja8,LOC108258942,LOC107603011,LOC107566539,LOC107746070 coding downstream 393992 12762266 ~ 12767170 (+)
LOC103028151 fstl1,LOC103028151,LOC108428196,LOC108258944,LOC106575075,LOC105019681 coding downstream 417484 12785758 ~ 12815661 (+)
G102901 pdxkb,LOC108428208,LOC103021965,LOC102792432,LOC106527750,LOC107376125,LOC108247466,LOC107676865 non-coding upstream 42666 12319012 ~ 12323584 (+)
G102900 NA non-coding upstream 52226 12311224 ~ 12314024 (+)
G102891 agpat3,LOC107746273,LOC107676863 non-coding upstream 78514 12283504 ~ 12287736 (+)
G102889 NA non-coding upstream 87238 12273789 ~ 12279012 (+)
G102888 NA non-coding upstream 95995 12269948 ~ 12270255 (+)
G102902 NA non-coding downstream 10817 12379091 ~ 12402254 (+)
G102916 NA non-coding downstream 45892 12414166 ~ 12414973 (+)
G102917 NA non-coding downstream 48145 12416419 ~ 12422817 (+)
G103023 NA non-coding downstream 257925 12626199 ~ 12740168 (+)
G103025 NA non-coding downstream 286327 12654601 ~ 12676518 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 341486 12000639 ~ 12024764 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 1071435 11274746 ~ 11294815 (+)
LOC111193528 NA other upstream 1496094 10868577 ~ 10870156 (+)
G102411 LOC107747660 other upstream 1840090 10525677 ~ 10526160 (+)
trnar-ucu_1 NA other upstream 3532319 8833840 ~ 8833931 (+)
cryzl1 cryzl1 other downstream 115348 12483622 ~ 12522303 (+)
sh3pxd2a sh3pxd2a other downstream 482727 12851001 ~ 13032506 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other downstream 1560791 13929065 ~ 13935667 (+)
G103490 LOC106510829 other downstream 1892351 14260625 ~ 14261539 (+)
G103551 NA other downstream 2250361 14618635 ~ 14619082 (+)

Expression


Co-expression Network