G102916


Basic Information

Item Value
gene id G102916
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12414166 ~ 12414973 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU139092
CTGCTCACTCAGGCGCCCCACTCTGAGGAAAGGTGCTGCCATTCCTGGAGTGTGCAGAAAACCAGCTTCCACTGCTGGACGTTTCCTCCTCCTGTTCCACCAGactctctctctctctctttctctctctcttcgtggTGGTCTGGTGTCTCTGGAGGTGGCCACACGTCCACACTGTGTCTTGGTCACTTCTTGTCCATCTGACTGGACTGGGGGTGAAGTTAAAGGATTAAGAAGGACAGACACTGATTTAGAAACACGCAGTGAAGCTCAGACACACAGCAGGGCTGCAAGGAGCTGAGGGGAAACTACGTGCAGCAGTGGTTGTGTAACCTGACAAACACGCCCCCTTAAAAACATGAGCTCTGACTGAAACACTGAGACGCAGCGGGGTGTTTTTTACACTCCACATAAATAAGAGAGACTTCACCGTGTCAGCCCGCCATTATCTCCTCCTCAGAAGCGCTGAAATTAAGCTAATCTTATAAACGCTTATCTAATGAACACGTGCGGCCTGCAGAGGGCGCTCccgccactctctctctctctacactaataaacactcagacatgtataaagtactagtgACCCAGACTGCTTCCAGAAACTTTAcctactcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139092 True 620 lncRNA 0.50 2 12414166 12414973

Neighbor

gene id symbol gene type direction distance location
LOC103032463 NA coding upstream 35204 12357030 ~ 12378962 (+)
arl11 NA coding upstream 355712 12056110 ~ 12058454 (+)
LOC111193615 mcf2l coding upstream 417439 11986919 ~ 11996727 (+)
LOC103035965 sox1 coding upstream 780391 11631733 ~ 11633775 (+)
LOC103036596 arhgef7,arhgef7b,LOC107718510,LOC107567796,LOC107746262 coding upstream 963782 11404244 ~ 11450384 (+)
cbr1 cbr1,LOC108428204,LOC107746284,LOC107692178 coding downstream 120307 12535280 ~ 12539566 (+)
LOC103025394 NA coding downstream 131361 12546334 ~ 12561111 (+)
bcl9 bcl9,LOC107676875,LOC107746055,LOC107746285 coding downstream 153606 12568579 ~ 12733197 (+)
LOC103027506 gja8,LOC108258942,LOC107603011,LOC107566539,LOC107746070 coding downstream 347293 12762266 ~ 12767170 (+)
LOC103028151 fstl1,LOC103028151,LOC108428196,LOC108258944,LOC106575075,LOC105019681 coding downstream 370785 12785758 ~ 12815661 (+)
G102902 NA non-coding upstream 11912 12379091 ~ 12402254 (+)
G102907 NA non-coding upstream 45892 12366250 ~ 12368274 (+)
G102901 pdxkb,LOC108428208,LOC103021965,LOC102792432,LOC106527750,LOC107376125,LOC108247466,LOC107676865 non-coding upstream 90582 12319012 ~ 12323584 (+)
G102900 NA non-coding upstream 100142 12311224 ~ 12314024 (+)
G102891 agpat3,LOC107746273,LOC107676863 non-coding upstream 126430 12283504 ~ 12287736 (+)
G102917 NA non-coding downstream 1446 12416419 ~ 12422817 (+)
G103023 NA non-coding downstream 211226 12626199 ~ 12740168 (+)
G103025 NA non-coding downstream 239628 12654601 ~ 12676518 (+)
G103067 NA non-coding downstream 352243 12767216 ~ 12783303 (+)
G103068 NA non-coding downstream 360281 12775254 ~ 12782304 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 389402 12000639 ~ 12024764 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 1119351 11274746 ~ 11294815 (+)
LOC111193528 NA other upstream 1544010 10868577 ~ 10870156 (+)
G102411 LOC107747660 other upstream 1888006 10525677 ~ 10526160 (+)
trnar-ucu_1 NA other upstream 3580235 8833840 ~ 8833931 (+)
cryzl1 cryzl1 other downstream 68649 12483622 ~ 12522303 (+)
sh3pxd2a sh3pxd2a other downstream 436028 12851001 ~ 13032506 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other downstream 1514092 13929065 ~ 13935667 (+)
G103490 LOC106510829 other downstream 1845652 14260625 ~ 14261539 (+)
G103551 NA other downstream 2203662 14618635 ~ 14619082 (+)

Expression


Co-expression Network