G103067


Basic Information

Item Value
gene id G103067
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 12767216 ~ 12783303 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU139294
CTACTGTCTATAATTAACTGTGgccaacaaaaataacaaaatactgGTTAATGTATAGGCTGTTCATTGTTGTTTTCAAGGTCCCTGCAGTGATCACCAGCAGAAGGCGCCGTAACAAAAGttataaagagaaaataaattcaGTCTACTATGCATATGCACAGCACCAGACATCAAACTAACCAACGAGAAATCAGGTTAAGTTCAACAGCTTCAATAAAGTGCAATGACTCAAAAACTGCTCTTCCAAAAAGCTGTACTGgaagttaaagggttaaagcatGGTAAATACATATGCTGTAACTtatctttactgttaaaatattttatgtctCTCTTTAAGAGATATTTCTGCACTTTGTATTTACATTATACTGTGAACTGTTAAtgttataacaaaaaataaacactt
>TU139295
cacacacacacagacacacacacacacacacacacattcattaaaTTGATAAAATCTGAGTTCTAAGATGTTCTAGCTGTAAAAATCAGCTGCACCACTTCctctgcagtgctgctgaagtaaAGCCAGACTTCCTACTAAACGCAGTTAAGAATCGGAAAGCTCTTCACACTTTGAGCTGCAGCCGTGAAGTGTTATGATGACAACagGCCAAGATGCTAATTCAAGCTTTGTATCTTCAACCACGTTTCTAACTCCTGTAAGCAACTCTACAGCTTCCAACCCTGGTCTAACAAGGCTGGCAGTTATTTTAGAATTAATTATTCTGTGCCTGGCCATGTCCTTATTTCTGGTCCTGTTTACGTCTATGGTTCTCCTAATTAAACGGATATATGAGCGGTGAGTTTACGggttaatttaaaacaaaaatcaataacTGATAGCTTTTGATTTTGCttcgtttttttatttcattgtcttgattttttttcttgccagGAAAATGTCACCACTAAGTTGTGAACACCATGATGAAGAGGTCCCTGCAGTGATCACCAGCAGAAGGCGCCGTAACAAAAGttataaagagaaaataaattcaGTCTACTATGCATATGCACAGCACCAGACATCAAACTAACCAACGAGAAATCAGGTTAAGTTCAACAGCTTCAATAAAGTGCAATGACTCAAAAACTGCTCTTCCAAAAAGCTGTACTGgaagttaaagggttaaagcatGGTAAATACATATGCTGTAACTtatctttactgttaaaatattttatgtctCTCTTTAAGAGATATTTCTGCACTTTGTATTTACATTATACTGTGAACTGTTAAtgttataacaaaaaataaacactt

Function

GO:

id name namespace
GO:0016064 immunoglobulin mediated immune response biological_process
GO:0002250 adaptive immune response biological_process
GO:0002252 immune effector process biological_process
GO:0002253 activation of immune response biological_process
GO:0072376 protein activation cascade biological_process
GO:0006955 immune response biological_process
GO:0006956 complement activation biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0006959 humoral immune response biological_process
GO:0048584 positive regulation of response to stimulus biological_process
GO:0002376 immune system process biological_process
GO:0002682 regulation of immune system process biological_process
GO:0002684 positive regulation of immune system process biological_process
GO:0050776 regulation of immune response biological_process
GO:0050778 positive regulation of immune response biological_process
GO:0002443 leukocyte mediated immunity biological_process
GO:0002449 lymphocyte mediated immunity biological_process
GO:0002455 humoral immune response mediated by circulating immunoglobulin biological_process
GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains biological_process
GO:0019724 B cell mediated immunity biological_process

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU139294 False 412 lncRNA 0.33 2 12776077 12783303
TU139295 True 870 lncRNA 0.37 5 12767216 12783303

Neighbor

gene id symbol gene type direction distance location
LOC103027506 gja8,LOC108258942,LOC107603011,LOC107566539,LOC107746070 coding upstream 46 12762266 ~ 12767170 (+)
bcl9 bcl9,LOC107676875,LOC107746055,LOC107746285 coding upstream 34019 12568579 ~ 12733197 (+)
LOC103025394 NA coding upstream 206105 12546334 ~ 12561111 (+)
cbr1 cbr1,LOC108428204,LOC107746284,LOC107692178 coding upstream 227650 12535280 ~ 12539566 (+)
LOC103032463 NA coding upstream 388254 12357030 ~ 12378962 (+)
LOC103028151 fstl1,LOC103028151,LOC108428196,LOC108258944,LOC106575075,LOC105019681 coding downstream 2455 12785758 ~ 12815661 (+)
LOC103028459 LOC108428195,LOC108258943,LOC107566531,LOC107710590 coding downstream 34883 12818186 ~ 12833144 (+)
stn1 obfc1 coding downstream 53856 12837159 ~ 12846645 (+)
cfap58 NA coding downstream 441998 13225301 ~ 13429937 (+)
LOC103043054 NA coding downstream 796824 13580127 ~ 13590984 (+)
G103023 NA non-coding upstream 27048 12626199 ~ 12740168 (+)
G103025 NA non-coding upstream 90698 12654601 ~ 12676518 (+)
G102917 NA non-coding upstream 344399 12416419 ~ 12422817 (+)
G102916 NA non-coding upstream 352243 12414166 ~ 12414973 (+)
G102902 NA non-coding upstream 364962 12379091 ~ 12402254 (+)
G103086 NA non-coding downstream 33955 12817258 ~ 12817489 (+)
G103102 NA non-coding downstream 235545 13018848 ~ 13019168 (+)
G103130 NA non-coding downstream 250928 13034231 ~ 13034919 (+)
G103133 neurl1,neurl1aa,LOC107676877 non-coding downstream 257337 13040640 ~ 13045883 (+)
G103163 NA non-coding downstream 429094 13212397 ~ 13214646 (+)
cryzl1 cryzl1 other upstream 244913 12483622 ~ 12522303 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 742452 12000639 ~ 12024764 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 1472401 11274746 ~ 11294815 (+)
LOC111193528 NA other upstream 1897060 10868577 ~ 10870156 (+)
G102411 LOC107747660 other upstream 2241056 10525677 ~ 10526160 (+)
sh3pxd2a sh3pxd2a other downstream 67698 12851001 ~ 13032506 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other downstream 1145762 13929065 ~ 13935667 (+)
G103490 LOC106510829 other downstream 1477322 14260625 ~ 14261539 (+)
G103551 NA other downstream 1835332 14618635 ~ 14619082 (+)
G103561 NA other downstream 1907740 14691043 ~ 14692199 (+)

Expression


Co-expression Network