G103130


Basic Information

Item Value
gene id G103130
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 13034231 ~ 13034919 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU139368
GAGCACGAGGCAGCAGGAGGTTGTAAGTTCGCTGCCTAGTCAGCTAAAAGTTTCTCCACAAGAGATATATGTTAGTTGTGAGTTTATTAAGTGGGTAAAAACCTCGGGCAGAATGTTTGTCTATACCTTTTTGGAGTGAGCTGGACTATATATGCCCCACCCCGTGTCAGTGTTTCTGCTCGAAACCTGGAATTGACGAGTCTGCTAGCTGGCTAAGTTAGCTGCGTGGAGCTAAAGGGTCTGCTTAACTCTGCACAAGAGCAACGTTCCCCTTTGAACTGTAAAGTAAGGTCAGTTATAACTGTGAGATATTGTCAACAGCAAGAGTCGACAGAGTTCATCCCCAGTGGAACTAAGACAGTTGGGCTGAAGGACAACTCTTTTAACTACATGTATGCTgctgaactgagagagagatgctgGCTAGTGAGCTGCGGAGCTCTGCTACTGCTGAACCGAGAGAAGGTGCggagctgtgctgctgctggaccGAGAGAAGGTGCggagctgtgctgctgctcctgAACCGAAAGAAGGTGCGGAGCTGAGGT

Function

NR:

description
PREDICTED: serine/threonine-protein kinase D2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139368 True 551 lncRNA 0.49 3 13034231 13034919

Neighbor

gene id symbol gene type direction distance location
stn1 obfc1 coding upstream 187586 12837159 ~ 12846645 (+)
LOC103028459 LOC108428195,LOC108258943,LOC107566531,LOC107710590 coding upstream 201087 12818186 ~ 12833144 (+)
LOC103028151 fstl1,LOC103028151,LOC108428196,LOC108258944,LOC106575075,LOC105019681 coding upstream 218570 12785758 ~ 12815661 (+)
LOC103027506 gja8,LOC108258942,LOC107603011,LOC107566539,LOC107746070 coding upstream 267061 12762266 ~ 12767170 (+)
bcl9 bcl9,LOC107676875,LOC107746055,LOC107746285 coding upstream 301034 12568579 ~ 12733197 (+)
cfap58 NA coding downstream 190382 13225301 ~ 13429937 (+)
LOC103043054 NA coding downstream 545208 13580127 ~ 13590984 (+)
LOC103024001 LOC108439370,LOC108258974,LOC107758869,LOC107590749 coding downstream 595698 13630617 ~ 13665746 (+)
LOC103023667 LOC108439371 coding downstream 638379 13673298 ~ 13676357 (+)
LOC103023349 LOC108439383,LOC108258976 coding downstream 641525 13676444 ~ 13680221 (+)
G103102 NA non-coding upstream 15063 13018848 ~ 13019168 (+)
G103086 NA non-coding upstream 216742 12817258 ~ 12817489 (+)
G103067 NA non-coding upstream 250928 12767216 ~ 12783303 (+)
LOC111193478 NA non-coding upstream 251173 12781599 ~ 12783058 (+)
G103068 NA non-coding upstream 251927 12775254 ~ 12782304 (+)
G103133 neurl1,neurl1aa,LOC107676877 non-coding downstream 5721 13040640 ~ 13045883 (+)
G103163 NA non-coding downstream 177478 13212397 ~ 13214646 (+)
G103169 NA non-coding downstream 190562 13225481 ~ 13225718 (+)
G103178 NA non-coding downstream 326684 13361603 ~ 13362004 (+)
G103212 NA non-coding downstream 413293 13448212 ~ 13448448 (+)
sh3pxd2a sh3pxd2a other upstream 1725 12851001 ~ 13032506 (+)
cryzl1 cryzl1 other upstream 511928 12483622 ~ 12522303 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 1009467 12000639 ~ 12024764 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 1739416 11274746 ~ 11294815 (+)
LOC111193528 NA other upstream 2164075 10868577 ~ 10870156 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other downstream 894146 13929065 ~ 13935667 (+)
G103490 LOC106510829 other downstream 1225706 14260625 ~ 14261539 (+)
G103551 NA other downstream 1583716 14618635 ~ 14619082 (+)
G103561 NA other downstream 1656124 14691043 ~ 14692199 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other downstream 1964536 14999455 ~ 15297939 (+)

Expression


Co-expression Network