G103133 (neurl1,neurl1aa,LOC107676877)


Basic Information

Item Value
gene id G103133
gene name neurl1,neurl1aa,LOC107676877
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 13040640 ~ 13045883 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU139371
TTCGCAGTTGATTTCTGAAATTGAAATTTGAGTTATAACTCGAATCGCTAGTTTTATTTTGGGCTAAaccagtttaacagtttaatatATCTTTACTTCCACACTCTGATTCTGAAATCACATCTATTGCTTGAAGCTTTCTGCTTTTAGAAATGATGGAGCACGCTGATCTGATATCTAAACTAATCAGAttgtttgaataaataaatcaccCACAGGCTCTGGGAGGAGGTATAAAACAGGGCGGGGCAGCAGAGAGGAAATTACAAAAGCAGGCTGAAACTAAAGGGACGGTACGTTAGCGCAGGACTGCGCTTATCTTGTAGCTGGAAGCGACGGGTTTTGTGATGGTTTACTATGGTTTAGATTTACTGCACAGCACAGCCTCGCAGGTACGAGATAGCATCACCCTCTTCTGTTTTCAAGAAATACAGTGCAGTGTAACCCAGAGAGGAGCACgcaacaaacaaatacaatcatcatcatcaatccaACCGTAGCCAAGCGATTAGAGGAACACCTTGGATACTGCTATTCTAATCATCACTTCAAGCGACGGCGGCACACGCCATAGAAATAGTGTTGTATCTTTATCAGCAGAGGAGAAGAACCACTGATTCCGGCTTTCCAGCGCCTCCACTTAAATCTCACGAGAACCGGAGCTGAATTTTTACTGCCTAGAACAATAAAAAGGACATCCAGCGTTCaaatatatgtacaaaaaaacCTAAACTTCCTAAACTTCCCAAACcgctgtttttctattttatagtGACCGCAGCGATAAAGTGTATGAGAGTGAGGATGTATAACGCACATGTTTTTTAAGCATtgcctgaataaaaaaaaataaaaaaagagttggCTAATGCTTTAGCAGCAGATTTGAGCCCCAGTTGTCACAAATGATTCACATTAAGCTAACACGCTAACCACGACAAGCTAATCACTGACACTGTCCATGAAATGTAGCCAAAGTACTGCAGAATCTTCCTTAGTTTAATATGATGATTTTAAACTAGGACACGCAGTGTCACTGATGCAAAGCACCATGCGAGAGGGAGTGAGTTACACGCCAGGTCCATGAGTATCATCATATCATGCTGTTACAAAGCTAGCCAGAGCTAACCTCAGCTACTTAATGATCACTTGTCCATGAAATGTAGCCAAAGAACAGAACAAAGAGTTCTGCAGAGTCTTTCCCAGTTTAACGTGATAACTAGAGCTGGGATCATGATCCTAAACTAGTGTCACTGATGCGGAGCACCATAAGCCAGGTGCTTGAGGTGCTTTACACCTGAAAAATCATCAGATTTTCCAAATACATTATCATGTCATGAtgtcagtaagtaagtaataaGTATGTTTGTTGTCTTCTACTAAAATCGTAGCAGAGAAAGAACCTACATAATATCTGTGTTCCAAAGCTTAGGCTGCAACCAAGGTGCAGCACATCCGAGCTGCATTTTACGGCCGCTGTGAGTAAAGAATCTTTTGTATGCAGCCTAGAAATGCCGCCTACGTTCCGAGcaattttgagggcacagctGATGTATCTTTTCAGTCACTCAGTTACTAACAGTTCACTGTGCTCAAACAACGCAATGGGAAAGATCAGTAAGGGTGCAGCAAATATTCAACAACAAACTCTTCAGCTGTAAACGGCAAAATATGATTTTCAAGATTTGGCAGAATAAATTATACTGAACAATGACTCAACTCTTTTGGTTTGTCAGCTCaaatcttaaaaacaaaaagcatttttaagctATAGAATTCATGcaatagtgaaaaaaatagCATAATTACTGAAAATGTATGTGTTGAAAATAATGTGTTCAGTATCCAGTATTCAATAATGCTTACCAAGCTAGCATACATTTTAATTGGTGGTAGGTCATTTTTTAATCAAGTTGACCAAATATCTAATGAATAGGAGTTGATTGCCGGAGGACCTGTCCTACCTCAActgcagcctaggctttggaacATACAAGAATTGATTATAATGCTGGTCACCAACACCATCAAAATTACATTTCTCtcaaaatagaaccctgtgggactccacaaaaCATAATAAACCAAATGGTTACAGTTTCTGCTTTagaattaaaaactgaaaagtttTCCAGGTGTAATAGCATGTCATAGCTAATCCTGCACTTTAACCCTGACTTTCCTAGATGGAATATTCAAGGAGAATTTGGGTGCACTGTAAAATTATATCAACATTAAAGGTCCTTACTTTATATAAAACTGCCCAAAGCCTATTTCACAGTAGTTGACGTTAATTTTGCAACTAGTGGTGGAAGAATGAGTGTAAATTAGTGTAAATGTGACTGGTTTAATGTTGTAATGGACTTCATACACTCTTTTGACAATTTTGCTTTTGACGAATGCTAAACGCACCCTgaaaataattgaatataaaacgttttttttttatgtagaaaGATTGGCGACAGAGGCGGCATTATTATGACATTATCAGTCAGATATCATCTCAGACTGTTCAGTCTATGGCTAAAACCACTCCAATTCTGTCTTAGTGTCTctgatttagtgttttttttaaggcaaatgACTTTTCATTGAAAGACAGGATAAAGTGAGTCAGTGTTATAATTCATGTACAGGGTGAGTCAAAAGTCAAAGAacacccttttatttcagaaaggAAATCTGATAGCTTTCGCAATGGTGGCCATGTTTCGGACATAGTCTAAAAGATAGGCCCCCTGATCTGTTATTTGCTGGAGTATTCAGATATGTCGTCTTCACTTTCATTTCTTACTTTCTTAACTAATTCAGTATTTCacttttttgcatttctttCAAGATCAGCAGGAAAATATGAACCAGCATTAAGTCAAACAAATGATTTTTCCCTCCTTCTTCCGATCTCTCACAGCGATCTCTTCTTTCCTCTGCTTTATTTTGTTCCCCAGTGGCCTTGAGTAGCTGTTCTGTAGCGAATAAGGAGGGTACTCAGAGAAATATGGATTAACACGGCAAATCAAATAGCCTCTCTCTCGCCACAAATGATCCTTTCATTGTTTAAGGCCTCAAGGCTATGCTCTTTCGTCTGTGATTTCGGTCGCCATGGCCACTGCATGCGCAGAGCGCTTCAGGAAGCTTGTTTTGAACACTCGGAATGGCGAAACTGACTGAGTTTGTGGtgaatttttttctttgattacGGCTCTGTCTCGACTTGGGCTTAAAATCTGATTACTTTTGAAAGATGTTGTTTTTCCTCTCTGTGGGAACGTGTGTTCCAGTCCCTGTTCCAGTTCATTAAATATGAATCTTCTTAATGAAACCTTTATAGCAAGTTTTAAGAGACAGAAATTAAGCCTAGTCTGAAGCCATATTCAAAAGGTATTGGATTTAAATGAGGAGGTGGACTAAGGAGTATATAAGTGTAAATTTAAGGTGTCATCACACCTACAAGtctaaaataaaggttaatgtGTTTGTATATTAAACATTGCATTAGTTTATTCTAggttaatttgattttacacTGCAATTTGACATACTTTGCTACATCATGTTGGCATCGATTGATTTGTAGAATCTTGTCAGTTCAGCGAGTTGCCCtttcaggtgttgtgccaaattctgtcCCTCTGCAAGAACCACCCTCAGAGGGAGTCCCCCGGATTCCTTCTTATTCTACAGCTACAgaagatacaggaatcaccagcataGTATAGAGGACTGGATTCTGAAACACCATTCTGAACAGTTTAAAGGTTGATGACGGTCTTATGTACCTTTActttcctgtaattggtccaaatATCTGAACCTTTtagaaaagtgcttttaaaCCTCCCAAAAAACAGTCCATGGTTTAGTTGATTGGTACTCCACCTCCTCAGGTACAGTAAAACTAATCCCATTTGAATAGGGAtttccttttaatggaaaatcttcAAGTCCAGACTAGGCTTaataatccctgtctgggagaCTGAGCCTTAATGCTTGAATGACAAGCATTAGCATTTATAGcattacagcagcagcagcaaaaagCAGGAGAACAACACTGACTCCACACGGGACAACTGAGAGACCTTTTTAGATTATACATTGCTTCACAGAACATCGCGCTTTAGTCCTTGAAGGTCCTCACACTCATTAAACTCAACTCAACAGGGCAATACTGGCTTTAGAGCGTTGAGCAACAGCAAGATTTAGTACtcttaagtgtgtgttttttgttttatctcttCCCCAAGTTTCATCTGTACACAGGCAAAAAATGTGACCCTGAAACCTTTTGAGAGCTTCAAGCCGAAGCTAGAAAAGATAAAATCGACTTCCCCAAACTATGTTAGACGCCTACGTTAAATACAACCCACGTCTTGCTTCCAGCTGGAGAACTCCGCACCTACGAAGTGGACGAGACTCGCAGAGAGAGTTGTCGTATGGCTCATAGAGAGGGGAAACGAAAACGGGAGACGCTGCGAGTGTGACGTCTCCTGAGCATTGTCTGCAGCTTCCTGAATTGTTGGAGGTTATTTACAtgatttttctttccttttccttgcgtgtgagtgtgtatatgtatgtgtgtgtgtatatatgtgtgtgtctatggAAAGCTTTAGTCAGAATCTCAGCCTCCTGTCCTGAGTTGCGACACGGCCAGTGACCGTCGCAGGCATGGCTCGCACATTAAACACAGCAAAGAACTTTTTGCGGATGGATGCCTGAGCCTTTGATGTCCAAGGTTCAAAAGTCATCAGCGTGGGAGCAGAAAAGCCCATGAAtgtatcagagagagagagaggaagtccCTGAAGTGCGACGCCTCCTTCCTCAACGTACGAGAGTCTCTTTGTGTCACGGCCTCTGTGGGGCTCCGTATGTGTTAGAAAAGAAGGACACGCCTCCTATGTGCTCCGGTAGGTCTTTATAATGTCTTTAATCGCCCTCCTGCAGATCGGACAGCAGGCGTTGGCCATCTTTTTGAGGCGCAGGCCGCAGGTGTAGCAGAGACACATGTGACCGCAGGCGTAGATGACCGTGTCCACGGCGTTCTCGTAGCAGATGGAGCACTCGTCTGGCCATGAGCTGGAGGATGAGGGGAAGGTGGGGGATTTGGGGAGGTTGATGGGAGAACTCGGGTTTGTTCCTTGGGAAGAAGGAAAGTGATGGGGtaagaaagagaatgaaaggg

Function

symbol description
neurl1aa Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in negative regulation of Notch signaling pathway and nervous system development. Predicted to be active in plasma membrane and postsynaptic density. Orthologous to human NEURL1 (neuralized E3 ubiquitin protein ligase 1).
neurl1 Predicted to enable translation factor activity, non-nucleic acid binding and ubiquitin protein ligase activity. Involved in negative regulation of Notch signaling pathway; negative regulation of cell population proliferation; and positive regulation of apoptotic process. Located in plasma membrane.

NR:

description
PREDICTED: E3 ubiquitin-protein ligase NEURL1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139371 True 5197 lncRNA 0.41 2 13040640 13045883

Neighbor

gene id symbol gene type direction distance location
stn1 obfc1 coding upstream 193995 12837159 ~ 12846645 (+)
LOC103028459 LOC108428195,LOC108258943,LOC107566531,LOC107710590 coding upstream 207496 12818186 ~ 12833144 (+)
LOC103028151 fstl1,LOC103028151,LOC108428196,LOC108258944,LOC106575075,LOC105019681 coding upstream 224979 12785758 ~ 12815661 (+)
LOC103027506 gja8,LOC108258942,LOC107603011,LOC107566539,LOC107746070 coding upstream 273470 12762266 ~ 12767170 (+)
bcl9 bcl9,LOC107676875,LOC107746055,LOC107746285 coding upstream 307443 12568579 ~ 12733197 (+)
cfap58 NA coding downstream 179418 13225301 ~ 13429937 (+)
LOC103043054 NA coding downstream 534244 13580127 ~ 13590984 (+)
LOC103024001 LOC108439370,LOC108258974,LOC107758869,LOC107590749 coding downstream 584734 13630617 ~ 13665746 (+)
LOC103023667 LOC108439371 coding downstream 627415 13673298 ~ 13676357 (+)
LOC103023349 LOC108439383,LOC108258976 coding downstream 630561 13676444 ~ 13680221 (+)
G103130 NA non-coding upstream 5721 13034231 ~ 13034919 (+)
G103102 NA non-coding upstream 21472 13018848 ~ 13019168 (+)
G103086 NA non-coding upstream 223151 12817258 ~ 12817489 (+)
G103067 NA non-coding upstream 257337 12767216 ~ 12783303 (+)
G103163 NA non-coding downstream 166514 13212397 ~ 13214646 (+)
G103169 NA non-coding downstream 179598 13225481 ~ 13225718 (+)
G103178 NA non-coding downstream 315720 13361603 ~ 13362004 (+)
G103212 NA non-coding downstream 402329 13448212 ~ 13448448 (+)
G103218 NA non-coding downstream 439637 13485520 ~ 13486984 (+)
sh3pxd2a sh3pxd2a other upstream 8134 12851001 ~ 13032506 (+)
cryzl1 cryzl1 other upstream 518337 12483622 ~ 12522303 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 1015876 12000639 ~ 12024764 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 1745825 11274746 ~ 11294815 (+)
LOC111193528 NA other upstream 2170484 10868577 ~ 10870156 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other downstream 883182 13929065 ~ 13935667 (+)
G103490 LOC106510829 other downstream 1214742 14260625 ~ 14261539 (+)
G103551 NA other downstream 1572752 14618635 ~ 14619082 (+)
G103561 NA other downstream 1645160 14691043 ~ 14692199 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other downstream 1953572 14999455 ~ 15297939 (+)

Expression


Co-expression Network