G103163


Basic Information

Item Value
gene id G103163
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 13212397 ~ 13214646 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU139404
cacacacacactccacaccacacaaaccccacaccacacacacttcaaaccacacataccccacaccacacacaccacacaccacacacaccccacaccacacaccacttcaaaccacacaaaccccacaccacacacacttcaaaccacacataccccacaccacacacactttaaaccacacacactccacagctcacatagcccacaccacacacactccaccccacacacacttcataccccacaccacacacactttaaaccacacacacactccacagctcacataccccacaccacacacactccaccccacacaccacataccacacacacttcacaccccacaccacacacactccacagcacacataccccacaacacacacttcaaaccacacataccccacaccacacacacttcaaaccacacataccccaca
>TU139406
cacacacttcaaaccacacataccccacaccacacacacactccacaccacacaaaccccacaccacacacactttaaaccacacacactccacagctcacatagcccacaccacacacactccaccccacacacacttcataccccacaccacacacactttaaaccacacacacactccacagcacacataccccacaccacacacactccaccacacacataccacacacacttcacaccccacaccacacacactccacaccacacataccccacaccacacacacttcaaaccacacataccccacacca
>TU139407
cacacacttcaaaccacacataccccacaccacacacacactccacaccacacaaaccccacaccacacacactttaaaccacacacactccacagctcacatagcccacaccacacacactccaccccacacacacttcataccccacaccacacacactttaaaccacacacacactccacagctcacataccccacaccacacacaccccaccacacacataccacacacacttcacaccccacaccacacactccacagcacacataccccacaccacacacacttcaaaccacacataccccacaccacacacactccacaccacacacacaccacaccacaca
>TU139409
ctccacaccacacacaccccacaccacacataccccacaccacacacactccacaccacacaaaccccacaccacacacactttaaaccacacacactccacagctcacatagcccacaccacacacactccaccccacacacacttcataccccacaccacacacactttaaaccacacacactccacagctcacatagcccacaccacacacactccaccccacacacacttcataccccacaccacacacactttaaaccacacacacactccacagctcacataccccacaccacacacactccaccccacacaccacataccacacacacttcacaccccacaccacacacactccacagcacacataccccacaccacacacacttcaaaccacacataccccacaccacacacactccacaccacacacacaccacaccacaca
>TU139412
cacacacttcaaaccacacataccccacaccacacacacactccacaccacacaaaccccacaccacacacactttaaaccacacacactccacagctcacatagcccacaccacacacactccaccccacacacacttcataccccacaccacacacactttaaaccacacacacactccacagctcacatacaccacacacactccaccacacacataccacacacacttcacaccccacaccacacacactccacaccacacataccccacaccacacacacttcaaaccacacataccccacacca
>TU139413
acacttcaaaccacacataccccacaccacacacacttcaaaccacacataccccacaccacacacacactccacaccacacaaaccccacaccacacacactttaaaccacacacactccacagctcacatagcccacaccacacacactccaccccacacacacttcataccccacaccacacacactttaaaccacacacacactccacagcccacaccacacacactttaaaccacacacacactccacagctcacataccccacaccacacacactccaccccacacaccacataccacacacacttcacaccccacaccacacacactccacagcacacataccccacaccacacacacttcaaaccacacataccccacaccacacacactccacaccacacacacaccacaccacaca
>TU139416
cacacacttcaaaccacacataccccacaccacacacacactccacaccacacaaaccccacaccacacacactttaaaccacacacactccacagctcacatagcccacaccacacacactccaccccacacacacttcataccccacaccacacacactttaaaccacacacacactccacagctcacataccccacaccacacacaccccaccacacacataccacacacacttcacaccccacaccgcacacataccccacaccacacacacttcaaaccacacataccccacaccacacacactccacaccacacacacaccacaccacaca
>TU139417
cacacacttcaaaccacacataccccacaccacacacacactccacaccacacaaaccccacaccacacacactttaaaccacacacactccacagctcacatagcccacaccacacacactccaccccacacacacttcataccccacaccacacacactttaaaccacacacacactccacagctcacataccccacaccacacactccaccacacacataccacacacacttcacaccccacaccacacacactccacaccacacataccccacaccacacacacttcaaaccacacataccccacacca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139404 False 446 lncRNA 0.53 2 13213473 13214646
TU139406 False 315 lncRNA 0.53 2 13212994 13214385
TU139407 False 349 lncRNA 0.53 2 13212994 13213927
TU139409 True 451 lncRNA 0.54 3 13212397 13213927
TU139412 False 310 lncRNA 0.52 2 13212994 13214385
TU139413 False 426 lncRNA 0.53 2 13212965 13213927
TU139416 False 337 lncRNA 0.53 2 13212994 13213927
TU139417 False 313 lncRNA 0.53 2 13212994 13214385

Neighbor

gene id symbol gene type direction distance location
stn1 obfc1 coding upstream 365752 12837159 ~ 12846645 (+)
LOC103028459 LOC108428195,LOC108258943,LOC107566531,LOC107710590 coding upstream 379253 12818186 ~ 12833144 (+)
LOC103028151 fstl1,LOC103028151,LOC108428196,LOC108258944,LOC106575075,LOC105019681 coding upstream 396736 12785758 ~ 12815661 (+)
LOC103027506 gja8,LOC108258942,LOC107603011,LOC107566539,LOC107746070 coding upstream 445227 12762266 ~ 12767170 (+)
bcl9 bcl9,LOC107676875,LOC107746055,LOC107746285 coding upstream 479200 12568579 ~ 12733197 (+)
cfap58 NA coding downstream 10655 13225301 ~ 13429937 (+)
LOC103043054 NA coding downstream 365481 13580127 ~ 13590984 (+)
LOC103024001 LOC108439370,LOC108258974,LOC107758869,LOC107590749 coding downstream 415971 13630617 ~ 13665746 (+)
LOC103023667 LOC108439371 coding downstream 458652 13673298 ~ 13676357 (+)
LOC103023349 LOC108439383,LOC108258976 coding downstream 461798 13676444 ~ 13680221 (+)
G103133 neurl1,neurl1aa,LOC107676877 non-coding upstream 166514 13040640 ~ 13045883 (+)
G103130 NA non-coding upstream 177478 13034231 ~ 13034919 (+)
G103102 NA non-coding upstream 193229 13018848 ~ 13019168 (+)
G103086 NA non-coding upstream 394908 12817258 ~ 12817489 (+)
LOC111193478 NA non-coding upstream 429339 12781599 ~ 12783058 (+)
G103169 NA non-coding downstream 10835 13225481 ~ 13225718 (+)
G103178 NA non-coding downstream 146957 13361603 ~ 13362004 (+)
G103212 NA non-coding downstream 233566 13448212 ~ 13448448 (+)
G103218 NA non-coding downstream 270874 13485520 ~ 13486984 (+)
G103221 NA non-coding downstream 318086 13532732 ~ 13533308 (+)
sh3pxd2a sh3pxd2a other upstream 179891 12851001 ~ 13032506 (+)
cryzl1 cryzl1 other upstream 690094 12483622 ~ 12522303 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 1187633 12000639 ~ 12024764 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 1917582 11274746 ~ 11294815 (+)
LOC111193528 NA other upstream 2342241 10868577 ~ 10870156 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other downstream 714419 13929065 ~ 13935667 (+)
G103490 LOC106510829 other downstream 1045979 14260625 ~ 14261539 (+)
G103551 NA other downstream 1403989 14618635 ~ 14619082 (+)
G103561 NA other downstream 1476397 14691043 ~ 14692199 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other downstream 1784809 14999455 ~ 15297939 (+)

Expression


Co-expression Network