G103218


Basic Information

Item Value
gene id G103218
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 13485520 ~ 13486984 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU139480
TTTGTGAGAAAGTGCTAAGGTTGCTGTAGATTGGCAGTTCCTTCACTGGTGTCGCTGGGTGATGGCAGACCAGTATAATGTTCATCTGGAGATCACGCCAGTACATCTTCAATGCTGCCACAAACTGTAGGCTCCTCAAATGTCCAAGATCATTGTTGCTACAGTGGATGAACAGGATATAAGATTAGTGAAGGCTTGATGCCAGTGGTCTGACCTGCCATCTCTTCACCACAGCAGTTGTAGCTTCATTCAATTTTTCAAGCCTGTTAAATGTTGCATTAGTTCAGTGTTTCTGAAGAATGTGAATagattatttttgtgcaaagtAAACATGTCTGGaagaagtattta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139480 True 351 lncRNA 0.41 2 13485520 13486984

Neighbor

gene id symbol gene type direction distance location
cfap58 NA coding upstream 55583 13225301 ~ 13429937 (+)
stn1 obfc1 coding upstream 638875 12837159 ~ 12846645 (+)
LOC103028459 LOC108428195,LOC108258943,LOC107566531,LOC107710590 coding upstream 652376 12818186 ~ 12833144 (+)
LOC103028151 fstl1,LOC103028151,LOC108428196,LOC108258944,LOC106575075,LOC105019681 coding upstream 669859 12785758 ~ 12815661 (+)
LOC103027506 gja8,LOC108258942,LOC107603011,LOC107566539,LOC107746070 coding upstream 718350 12762266 ~ 12767170 (+)
LOC103043054 NA coding downstream 93143 13580127 ~ 13590984 (+)
LOC103024001 LOC108439370,LOC108258974,LOC107758869,LOC107590749 coding downstream 143633 13630617 ~ 13665746 (+)
LOC103023667 LOC108439371 coding downstream 186314 13673298 ~ 13676357 (+)
LOC103023349 LOC108439383,LOC108258976 coding downstream 189460 13676444 ~ 13680221 (+)
LOC103047056 npy2rl,LOC108439369,LOC107758849,LOC107590775,LOC107714138,LOC107665946,LOC107692719 coding downstream 286446 13773430 ~ 13805229 (+)
G103212 NA non-coding upstream 37072 13448212 ~ 13448448 (+)
G103178 NA non-coding upstream 123516 13361603 ~ 13362004 (+)
G103169 NA non-coding upstream 259802 13225481 ~ 13225718 (+)
G103163 NA non-coding upstream 270874 13212397 ~ 13214646 (+)
G103133 neurl1,neurl1aa,LOC107676877 non-coding upstream 439637 13040640 ~ 13045883 (+)
G103221 NA non-coding downstream 45748 13532732 ~ 13533308 (+)
G103255 NA non-coding downstream 109267 13596251 ~ 13596572 (+)
LOC111193537 NA non-coding downstream 116612 13603596 ~ 13605378 (+)
LOC111193536 NA non-coding downstream 119124 13606108 ~ 13625446 (+)
G103323 NA non-coding downstream 270862 13757846 ~ 13765466 (+)
sh3pxd2a sh3pxd2a other upstream 453014 12851001 ~ 13032506 (+)
cryzl1 cryzl1 other upstream 963217 12483622 ~ 12522303 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 1460756 12000639 ~ 12024764 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 2190705 11274746 ~ 11294815 (+)
LOC111193528 NA other upstream 2615364 10868577 ~ 10870156 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other downstream 442081 13929065 ~ 13935667 (+)
G103490 LOC106510829 other downstream 773641 14260625 ~ 14261539 (+)
G103551 NA other downstream 1131651 14618635 ~ 14619082 (+)
G103561 NA other downstream 1204059 14691043 ~ 14692199 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other downstream 1512471 14999455 ~ 15297939 (+)

Expression


Co-expression Network