LOC111193536


Basic Information

Item Value
gene id LOC111193536
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 13606108 ~ 13625446 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU139529
tttttttttaatttacaagaAAACGTACTCTGCTCTCAGTTAAATGTAGGCCTTGTGGTTAACTGACTATTATCCACAATGAAACTGATACACAGATAAGTTAAAAAGTTTTGAAATGTTCCATTAAATCTACCTTTAGGAATGTTTCAGACATTAAACCTTGAATATCTGACAGATTGTTACACCAATCCTGCTTTGCTCTTTTAGGCTGAAAGGTACTGGTAAGTTCTAAGAATTCATAAAAGTCTTAATTCAGAGCTTGACATTGTAGCACATTTTTTATAGCTAAGGGTGTATCGATGCTGTCAAATTATTGAAAGAGGATATACACTGTGATTGTTTCATCCATAAATATGTGTCTTGTATGTGTGATGGTATCCATTTTGTAAACATTAAATACAGTACCATTGTGTTTTGAACTGTGTTGTTTCTGTCTTTGAGGTGGGGCAGGGGGTCTTGGTGCATTTGGCAGTCTTTTTTTGACAGAATTTCTTTTCCAGAGTTTCTTAACTCAGTTTCTGAGTTAAGATCTGACGTGTAGCAAGACTTCTTCCAGTTGGTGACAATGGTGTCAAATGATTCTGGGTAAACctgaaaacaacaacaacaatacagCTAATTGAAGTGTTTATGGAGGCCTTTTCCAGACGTCTTTCAAGTAAACAGACCTCTcaacagaagagagagaaccTGGCATACAAGGTGTACAATACAAACTGTCTGGATCAGCCATGCCTGGATTGTTGTACTGAAGGTCCCTGATAcattggtgtgttggtgtgtgtgtgtgtgtgtgtgtgtgtttgtgttaaatataaaaaaaatatgtatgtataaatatatatgtgattCATCTGAAGACATTTAACTAAG
>TU139530
taagtgtggtGGAATAGGAGTGCAATTGGAATTGAAGTGTTTATGGAGGCCTTTTCCAGACGTCTTTCAAGTAAACAGACCTCTcaacagaagagagagaaccTGGCATACAAGGTGTACAATACAAACTGTCTGGATCAGCCATGCCTGGATTGTTGTACTGAAGGTCCCTGATAcattggtgtgttggtgtgtgtgtgtgtgtgtgtgtgtgtttgtgttaaatataaaaaaaatatgtatgtataaatatatatgtgattCATCTGAAGACATTTAACTAAG
>TU139547
actttaaaaaatgcttttctcCCTCAGTAAACTCACCACTGACGGGAGGTAGGACACCCTGGGCATGTCCTGGTCCCTGAAAGGATTCCGCCCATGTGGACTGGTTGGACATGGGCCAAAATGACGTTTCGTGTTGCACGTAAACTCACCATTGAAATTAGGTAGGACACCCTGGGCGTGTCCTGGTCCCTGTGAGGATTCTTTCGATGTACAATGGTTGTACCACCTTGATGTGTCCTGTTGTATGGTAGGTG
>XR_002650587.1
tatagtaCTTTTTACAATACAAGTTgctgcaaagcagctttacagagaaaatgggtccacgcctcttatgagctaAGATGgaccaacaaaaacaaaactgttgATCAgccttatttcattttttattagcaGTCAGCAGCTCACTTTACTTGTGATAATCAAATGTCATGTTTTCTAATGCTCAAACCATCATGTGTGCAATTTTTCTGTGTCCTGTTTGCAGAATTGAAGTGTTTATGGAGGCCTTTTCCAGACGTCTTTCAAGTAAACAGACCTCTcaacagaagagagagaaccTGGCATACAAGGTGTACAATACAAACTGTCTGGATCAGCCATGCCTGGATTGTTGTACTGAAGGTCCCTGATAcattggtgtgttggtgtgtgtgtgtgtgtgtgtgtgtgtttgtgttaaatataaaaaaaatatgtatgtataaatatatatgtgattCATCTGAAGACATTTAACTAAGCTACTACTGTTATGCTTGAATAAATCAACTTATCTTTAAA
>XR_002650588.1
taagtgtggtGGAATAGGAGTGCAATTGGAATTGAAGTGTTTATGGAGGCCTTTTCCAGACGTCTTTCAAGTAAACAGACCTCTcaacagaagagagagaaccTGGCATACAAGGTGTACAATACAAACTGTCTGGATCAGCCATGCCTGGATTGTTGTACTGAAGGTCCCTGATAcattggtgtgttggtgtgtgtgtgtgtgtgtgtgtgtgtttgtgttaaatataaaaaaaatatgtatgtataaatatatatgtgattCATCTGAAGACATTTAACTAAGCTACTACTGTTATGCTTGAATAAATCAACTTATCTTTAAA
>XR_002650589.1
ACTGCTTAAATGCGCCAACATAGGACTTATACTAACACTCAGTAACGTTAGTATTTTTACTGCTTAAATGAGCCAACTTGGGTACACTAACgtttacattttattagtatGGGCATGTTTCATAGTGTTGGCTATAGCTAGACTGGTTAATGCTAGCAGGCCAGATCGTCCGTTCGTCCGCGAATTGAAGTGTTTATGGAGGCCTTTTCCAGACGTCTTTCAAGTAAACAGACCTCTcaacagaagagagagaaccTGGCATACAAGGTGTACAATACAAACTGTCTGGATCAGCCATGCCTGGATTGTTGTACTGAAGGTCCCTGATAcattggtgtgttggtgtgtgtgtgtgtgtgtgtgtgtgtttgtgttaaatataaaaaaaatatgtatgtataaatatatatgtgattCATCTGAAGACATTTAACTAAGCTACTACTGTTATGCTTGAATAAATCAACTTATCTTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139529 True 873 lncRNA 0.36 5 13610519 13625406
TU139530 False 285 lncRNA 0.38 3 13618413 13625406
TU139547 False 254 lncRNA 0.50 2 13606108 13609055
XR_002650587.1 False 519 lncRNA 0.36 2 13619923 13625446
XR_002650588.1 False 325 lncRNA 0.37 3 13618413 13625446
XR_002650589.1 False 478 lncRNA 0.38 3 13618450 13625446

Neighbor

gene id symbol gene type direction distance location
LOC103043054 NA coding upstream 15124 13580127 ~ 13590984 (+)
cfap58 NA coding upstream 176171 13225301 ~ 13429937 (+)
stn1 obfc1 coding upstream 759463 12837159 ~ 12846645 (+)
LOC103028459 LOC108428195,LOC108258943,LOC107566531,LOC107710590 coding upstream 772964 12818186 ~ 12833144 (+)
LOC103028151 fstl1,LOC103028151,LOC108428196,LOC108258944,LOC106575075,LOC105019681 coding upstream 790447 12785758 ~ 12815661 (+)
LOC103024001 LOC108439370,LOC108258974,LOC107758869,LOC107590749 coding downstream 5171 13630617 ~ 13665746 (+)
LOC103023667 LOC108439371 coding downstream 47852 13673298 ~ 13676357 (+)
LOC103023349 LOC108439383,LOC108258976 coding downstream 50998 13676444 ~ 13680221 (+)
LOC103047056 npy2rl,LOC108439369,LOC107758849,LOC107590775,LOC107714138,LOC107665946,LOC107692719 coding downstream 147984 13773430 ~ 13805229 (+)
eif3f eif3f,LOC107723164,LOC107758850,LOC107665937 coding downstream 295802 13921248 ~ 13927798 (+)
LOC111193537 NA non-coding upstream 730 13603596 ~ 13605378 (+)
G103255 NA non-coding upstream 9536 13596251 ~ 13596572 (+)
G103221 NA non-coding upstream 72800 13532732 ~ 13533308 (+)
G103218 NA non-coding upstream 119124 13485520 ~ 13486984 (+)
G103212 NA non-coding upstream 157660 13448212 ~ 13448448 (+)
G103323 NA non-coding downstream 132400 13757846 ~ 13765466 (+)
G103347 NA non-coding downstream 241967 13867413 ~ 13868223 (+)
G103349 NA non-coding downstream 263461 13888907 ~ 13910343 (+)
G103389 NA non-coding downstream 398846 14024292 ~ 14079252 (+)
LOC111193479 NA non-coding downstream 436223 14061669 ~ 14062007 (+)
sh3pxd2a sh3pxd2a other upstream 573602 12851001 ~ 13032506 (+)
cryzl1 cryzl1 other upstream 1083805 12483622 ~ 12522303 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 1581344 12000639 ~ 12024764 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 2311293 11274746 ~ 11294815 (+)
LOC111193528 NA other upstream 2735952 10868577 ~ 10870156 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other downstream 303619 13929065 ~ 13935667 (+)
G103490 LOC106510829 other downstream 635179 14260625 ~ 14261539 (+)
G103551 NA other downstream 993189 14618635 ~ 14619082 (+)
G103561 NA other downstream 1065597 14691043 ~ 14692199 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other downstream 1374009 14999455 ~ 15297939 (+)

Expression


Co-expression Network