G103410


Basic Information

Item Value
gene id G103410
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 14119738 ~ 14129753 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU139791
cgatctcgatattttatcgaaatcgaatcgaaatgaggtcacgatctcgagtatcgaagtcaaaaagaggatcgacgatccctcccgcgcgcgctacgcaaatagcgcagcgcgctacgcaaatggcgcggcaccaacacagcgcatcctattcatttaaatagagatagccactgcatgagcgcagtcggcgggagtgtgatcactgtttttatctgtccaacgggggagggggggcgggggttgggcgcgcaggttttgtatctgtatctaacggaggggtgggtgcgcgcaggtgagagcgtgtgaactcgctgaaatgcgtgtgtcagtgtgacttgagaacactgactatagatcacagtgaggtggattaaaaatcttaaacttataattgactacacctgttgctttccattgaattaaaaaaacatctttctctcagataaagtaaacacaagcgtgtttctgactaaaataaaagcttttcaggagagatataagttatgtgtaaatatttataagacaatacccacatcacttatctaaccagcctgtactgatttctgccccccaataatgctttcaataacctcttgtaacccctgggagccaggggttacactctaatagcctttactagtcttcagtagcctttaaaagacttacctggcggccgtggtgtgtccactaaactccgtagttataaacatcctgaggttagcagcgcgctaactgacctgtttataatgtaatcccagcagtgactccgtgtcggctgttctaacctgctgctgttagctgcttgggctgaaagatgaactgtagtgagctgtattatccggttagtggggttaaaacctttatttgtttacagaaacagtaaaaacggactggctgagccctgtagcccgtggctgggctgtactgaagtagtgactgagtgaagagagcggggcttgtgctgctgctgctagtggttggatgaagaactgcagcttcatgtaatgagcagtttcaccagccatccacacacagctctgataaactgcttgttttaatagtgcacactgttgctaccaaaaaaagtcactagatggcattaccatatatatcttaataaataataataataatatttataatatttataataataataataaatatattatttaaattttatgaggcataaaataataacaagaaaaaaaaacaagaaaatcgagaatcgaatcgaatcgtgaccctcaaatcgaaaatgaaatcgaatcgaggatttagagaatcgtgacacccctagtgtttattgat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139791 True 1314 lncRNA 0.42 2 14119738 14129753

Neighbor

gene id symbol gene type direction distance location
LOC111193619 NA coding upstream 58195 14051804 ~ 14061543 (+)
eif3f eif3f,LOC107723164,LOC107758850,LOC107665937 coding upstream 191940 13921248 ~ 13927798 (+)
LOC103047056 npy2rl,LOC108439369,LOC107758849,LOC107590775,LOC107714138,LOC107665946,LOC107692719 coding upstream 314509 13773430 ~ 13805229 (+)
LOC103023349 LOC108439383,LOC108258976 coding upstream 439517 13676444 ~ 13680221 (+)
LOC103023667 LOC108439371 coding upstream 443381 13673298 ~ 13676357 (+)
LOC103033906 LOC108258922,LOC108439361,LOC107564279,LOC107692629,LOC107665976 coding downstream 94227 14223980 ~ 14244056 (+)
LOC103031172 LOC103031172,LOC108439360 coding downstream 153174 14282927 ~ 14290159 (+)
LOC103031792 LOC108439359,LOC107723198,LOC107564241,LOC107692626,LOC100334711 coding downstream 179173 14308926 ~ 14330415 (+)
knl1 NA coding downstream 258705 14388458 ~ 14409396 (+)
dmd LOC108439357 coding downstream 280930 14410683 ~ 14664759 (+)
G103389 NA non-coding upstream 40486 14024292 ~ 14079252 (+)
LOC111193479 NA non-coding upstream 57731 14061669 ~ 14062007 (+)
G103349 NA non-coding upstream 209395 13888907 ~ 13910343 (+)
G103347 NA non-coding upstream 251515 13867413 ~ 13868223 (+)
G103323 NA non-coding upstream 354272 13757846 ~ 13765466 (+)
G103464 NA non-coding downstream 69284 14199037 ~ 14199576 (+)
G103482 NA non-coding downstream 119367 14249120 ~ 14249825 (+)
G103485 NA non-coding downstream 124617 14254370 ~ 14254846 (+)
G103488 NA non-coding downstream 129071 14258824 ~ 14259426 (+)
G103491 NA non-coding downstream 131850 14261603 ~ 14261978 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other upstream 184071 13929065 ~ 13935667 (+)
sh3pxd2a sh3pxd2a other upstream 1087232 12851001 ~ 13032506 (+)
cryzl1 cryzl1 other upstream 1597435 12483622 ~ 12522303 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 2094974 12000639 ~ 12024764 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 2824923 11274746 ~ 11294815 (+)
G103490 LOC106510829 other downstream 130872 14260625 ~ 14261539 (+)
G103551 NA other downstream 488882 14618635 ~ 14619082 (+)
G103561 NA other downstream 561290 14691043 ~ 14692199 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other downstream 869702 14999455 ~ 15297939 (+)
G104000 NA other downstream 2321422 16451175 ~ 16458209 (+)

Expression


Co-expression Network