G103482


Basic Information

Item Value
gene id G103482
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 14249120 ~ 14249825 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU139885
tctaattcatttaagttatatacctgatttgatatttttccatacaatccctgctaaagttttaggtgaaggagacccaAAGAAGGtaagtgcatgtttctggaaaaacaaaaaagtgggcgtggcatcgcaatggttaccatccatcgcgatgttgggtcataaatgacgatatggcacctcctcgtcctcctcctccaccaaaacCTTCAGGTCCGGTGGTGCTGACACACtaaaaaagcttatcagttttggaagagcatctgtttttagtttagcctcttccttcttttttcgcTCACAtcccacttgtacacttaatttcaccttaattccgTCTTTCACAAGCAGCGCGTGTGCGTTCATGGCATGGCCACAAGGCatggatggaatattccattttaacgcgaaagagagggggtgtggacggaatctgtatttctttgtaatttattgtgttgtctttgtttccattttaaacatacaagaatcaccatttATGAACTCACtatctgtgaattactgtccaaagggccccaattaccagctgtaggcctatgggaagtttgcagctagtcatggggcccctacagtgggctgcagtgggaggggcccaaggcagttgcctagcaatgcctctatgcaaagaccgcctctggtcagactctaccatcatcaatgctgctgcaagatcttggtgaaaaat

Function

NR:

description
ryanodine receptor 2a, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139885 True 706 lncRNA 0.44 1 14249120 14249825

Neighbor

gene id symbol gene type direction distance location
LOC103033906 LOC108258922,LOC108439361,LOC107564279,LOC107692629,LOC107665976 coding upstream 5064 14223980 ~ 14244056 (+)
LOC111193619 NA coding upstream 187577 14051804 ~ 14061543 (+)
eif3f eif3f,LOC107723164,LOC107758850,LOC107665937 coding upstream 321322 13921248 ~ 13927798 (+)
LOC103047056 npy2rl,LOC108439369,LOC107758849,LOC107590775,LOC107714138,LOC107665946,LOC107692719 coding upstream 443891 13773430 ~ 13805229 (+)
LOC103023349 LOC108439383,LOC108258976 coding upstream 568899 13676444 ~ 13680221 (+)
LOC103031172 LOC103031172,LOC108439360 coding downstream 33102 14282927 ~ 14290159 (+)
LOC103031792 LOC108439359,LOC107723198,LOC107564241,LOC107692626,LOC100334711 coding downstream 59101 14308926 ~ 14330415 (+)
knl1 NA coding downstream 138633 14388458 ~ 14409396 (+)
dmd LOC108439357 coding downstream 160858 14410683 ~ 14664759 (+)
LOC103039857 caly,LOC103039857,LOC108434710,LOC108258305,LOC105891014,LOC107583165,LOC107684294 coding downstream 1986203 16236028 ~ 16254238 (+)
G103464 NA non-coding upstream 49544 14199037 ~ 14199576 (+)
G103410 NA non-coding upstream 119367 14119738 ~ 14129753 (+)
G103389 NA non-coding upstream 169868 14024292 ~ 14079252 (+)
LOC111193479 NA non-coding upstream 187113 14061669 ~ 14062007 (+)
G103349 NA non-coding upstream 338777 13888907 ~ 13910343 (+)
G103485 NA non-coding downstream 4545 14254370 ~ 14254846 (+)
G103488 NA non-coding downstream 8999 14258824 ~ 14259426 (+)
G103491 NA non-coding downstream 11778 14261603 ~ 14261978 (+)
G103477 NA non-coding downstream 40943 14290768 ~ 14291254 (+)
G103495 NA non-coding downstream 51037 14300862 ~ 14301289 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other upstream 313453 13929065 ~ 13935667 (+)
sh3pxd2a sh3pxd2a other upstream 1216614 12851001 ~ 13032506 (+)
cryzl1 cryzl1 other upstream 1726817 12483622 ~ 12522303 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 2224356 12000639 ~ 12024764 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 2954305 11274746 ~ 11294815 (+)
G103490 LOC106510829 other downstream 10800 14260625 ~ 14261539 (+)
G103551 NA other downstream 368810 14618635 ~ 14619082 (+)
G103561 NA other downstream 441218 14691043 ~ 14692199 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other downstream 749630 14999455 ~ 15297939 (+)
G104000 NA other downstream 2201350 16451175 ~ 16458209 (+)

Expression


Co-expression Network