G103485


Basic Information

Item Value
gene id G103485
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 14254370 ~ 14254846 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU139888
tCTGTGAGAGCTTTGTGACGGGTTGAGCTGCACCCGCTGGACAGAAACTGCGAtagaaaagagtgatagaagtcagaaagagtgataggtgtcagtctccaaacacaagcagctacagaaaagcaccagaaatagaagctggatttgtcgctagtcgtttttaataaagaaaatgccgctataaggattaggaaagtctccggttcaactcagaacagaatggAAATGCTCCCAGTGCGCATGTTTACACCCAgagattcgctcatttcgctgtcaatcaaaaagggactccgcctcagacagatcatccaatcatcatgcagaagctgaggccagcccactgctccatagacccccagagacgctgagcgtccgatgggcgggacaaagtccagcatttatccaatgactcgtctccgctttgctccgctattgaagtctgtgcactgtttaaagcagcgctgtgaagctgcagga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139888 True 477 lncRNA 0.49 1 14254370 14254846

Neighbor

gene id symbol gene type direction distance location
LOC103033906 LOC108258922,LOC108439361,LOC107564279,LOC107692629,LOC107665976 coding upstream 10314 14223980 ~ 14244056 (+)
LOC111193619 NA coding upstream 192827 14051804 ~ 14061543 (+)
eif3f eif3f,LOC107723164,LOC107758850,LOC107665937 coding upstream 326572 13921248 ~ 13927798 (+)
LOC103047056 npy2rl,LOC108439369,LOC107758849,LOC107590775,LOC107714138,LOC107665946,LOC107692719 coding upstream 449141 13773430 ~ 13805229 (+)
LOC103023349 LOC108439383,LOC108258976 coding upstream 574149 13676444 ~ 13680221 (+)
LOC103031172 LOC103031172,LOC108439360 coding downstream 28081 14282927 ~ 14290159 (+)
LOC103031792 LOC108439359,LOC107723198,LOC107564241,LOC107692626,LOC100334711 coding downstream 54080 14308926 ~ 14330415 (+)
knl1 NA coding downstream 133612 14388458 ~ 14409396 (+)
dmd LOC108439357 coding downstream 155837 14410683 ~ 14664759 (+)
LOC103039857 caly,LOC103039857,LOC108434710,LOC108258305,LOC105891014,LOC107583165,LOC107684294 coding downstream 1981182 16236028 ~ 16254238 (+)
G103482 NA non-coding upstream 4545 14249120 ~ 14249825 (+)
G103464 NA non-coding upstream 54794 14199037 ~ 14199576 (+)
G103410 NA non-coding upstream 124617 14119738 ~ 14129753 (+)
G103389 NA non-coding upstream 175118 14024292 ~ 14079252 (+)
LOC111193479 NA non-coding upstream 192363 14061669 ~ 14062007 (+)
G103488 NA non-coding downstream 3978 14258824 ~ 14259426 (+)
G103491 NA non-coding downstream 6757 14261603 ~ 14261978 (+)
G103477 NA non-coding downstream 35922 14290768 ~ 14291254 (+)
G103495 NA non-coding downstream 46016 14300862 ~ 14301289 (+)
G103505 NA non-coding downstream 88824 14343670 ~ 14344468 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other upstream 318703 13929065 ~ 13935667 (+)
sh3pxd2a sh3pxd2a other upstream 1221864 12851001 ~ 13032506 (+)
cryzl1 cryzl1 other upstream 1732067 12483622 ~ 12522303 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 2229606 12000639 ~ 12024764 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 2959555 11274746 ~ 11294815 (+)
G103490 LOC106510829 other downstream 5779 14260625 ~ 14261539 (+)
G103551 NA other downstream 363789 14618635 ~ 14619082 (+)
G103561 NA other downstream 436197 14691043 ~ 14692199 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other downstream 744609 14999455 ~ 15297939 (+)
G104000 NA other downstream 2196329 16451175 ~ 16458209 (+)

Expression


Co-expression Network