G103490 (LOC106510829)


Basic Information

Item Value
gene id G103490
gene name LOC106510829
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 14260625 ~ 14261539 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU139893
cacttgcctgaagaccgccaccatcatcccagtccccaagagctccgcagtgacaggtctgaatgactaccggccagtggccctcactccgatagtcacaaagtgctttgaaagactggttcagacccacatcaaagccaccatcaacgtcactgtggatccacaccagtatgcatacaggaagaaccgatccacagaggatgccatctcctccgtggtccacactgccctcacccacctggagcagaaggattcctatgtccgtatgctctttgtggacttcacatccgctttcaacaccatgattcctcagaccctgataaataaactctcctcactaggactgagctcttcgctgtgcaactgggtcctagacttcctgaccaacaggccgcagtctgtgagaattcacaacatctcctcccccactataatcctcagcactggctcccctcagggctgtgtgctgagccccctcctgttcacactgctcacatatgactgctcacctctccatccaggctgtcatattgtgaagtttgcagacgacacggcagtggttggatgcatcacaaacagagatgagtccagctacaggcaggaggtggaacacctggaggattggtgcagagagaacaacctctgcatcaacgtaaagaagacgaaggagatgattgtggacttcagaagaggccagcatgcccacctccccctgcacattggaggatctgcggtggaagtggtcgacagctacaggtacttaggggtgcacctgagcagcaacctcacctggagcaacaacacttccactctggtcaggaaggcacatcagcggctctacttcctcaggaggctgagacgagctggactcgggagcgcagtcctcacctccttctacagatgtgtggtggagag

Function

NR:

description
PREDICTED: uncharacterized protein LOC106510829

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139893 True 915 TUCP 0.54 1 14260625 14261539

Neighbor

gene id symbol gene type direction distance location
LOC103033906 LOC108258922,LOC108439361,LOC107564279,LOC107692629,LOC107665976 coding upstream 16569 14223980 ~ 14244056 (+)
LOC111193619 NA coding upstream 199082 14051804 ~ 14061543 (+)
eif3f eif3f,LOC107723164,LOC107758850,LOC107665937 coding upstream 332827 13921248 ~ 13927798 (+)
LOC103047056 npy2rl,LOC108439369,LOC107758849,LOC107590775,LOC107714138,LOC107665946,LOC107692719 coding upstream 455396 13773430 ~ 13805229 (+)
LOC103023349 LOC108439383,LOC108258976 coding upstream 580404 13676444 ~ 13680221 (+)
LOC103031172 LOC103031172,LOC108439360 coding downstream 21388 14282927 ~ 14290159 (+)
LOC103031792 LOC108439359,LOC107723198,LOC107564241,LOC107692626,LOC100334711 coding downstream 47387 14308926 ~ 14330415 (+)
knl1 NA coding downstream 126919 14388458 ~ 14409396 (+)
dmd LOC108439357 coding downstream 149144 14410683 ~ 14664759 (+)
LOC103039857 caly,LOC103039857,LOC108434710,LOC108258305,LOC105891014,LOC107583165,LOC107684294 coding downstream 1974489 16236028 ~ 16254238 (+)
G103488 NA non-coding upstream 1199 14258824 ~ 14259426 (+)
G103485 NA non-coding upstream 5779 14254370 ~ 14254846 (+)
G103482 NA non-coding upstream 10800 14249120 ~ 14249825 (+)
G103464 NA non-coding upstream 61049 14199037 ~ 14199576 (+)
G103410 NA non-coding upstream 130872 14119738 ~ 14129753 (+)
G103491 NA non-coding downstream 64 14261603 ~ 14261978 (+)
G103477 NA non-coding downstream 29229 14290768 ~ 14291254 (+)
G103495 NA non-coding downstream 39323 14300862 ~ 14301289 (+)
G103505 NA non-coding downstream 82131 14343670 ~ 14344468 (+)
LOC111193540 NA non-coding downstream 112115 14373654 ~ 14375532 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other upstream 324958 13929065 ~ 13935667 (+)
sh3pxd2a sh3pxd2a other upstream 1228119 12851001 ~ 13032506 (+)
cryzl1 cryzl1 other upstream 1738322 12483622 ~ 12522303 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 2235861 12000639 ~ 12024764 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 2965810 11274746 ~ 11294815 (+)
G103551 NA other downstream 357096 14618635 ~ 14619082 (+)
G103561 NA other downstream 429504 14691043 ~ 14692199 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other downstream 737916 14999455 ~ 15297939 (+)
G104000 NA other downstream 2189636 16451175 ~ 16458209 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other downstream 2202399 16463938 ~ 16507787 (+)

Expression


Co-expression Network