LOC111193540


Basic Information

Item Value
gene id LOC111193540
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 14373654 ~ 14375532 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU139922
CCGTGTGATTCATCCAGCACAGACATGAAGctgaattttctgttttattaaactagaaaaaataaagtaaagttactaaattaaattatattcgaGTGATAAACTGCATTTAAAGAGCCCTGGAGCCCCCCTTCTACACTTCATGTGTTACTGAGCTTTGGTCGGGTTTTATTGGATCCCTTGGAGCCTTGAGAAAGCTTGAGACAACGTCGGAGTGGGAAGTCTTCCCTTTTCCCTTCATGAACTCGGACGGTACTGATCCCTTCCGTCAGGGTATTGGATGCCTGGAACCTTGTGTTGTCTAACAGCTCTGATAACAGGACACCCCATTCATTAGTGTCCTTGGCGAGCCAGATTCTGAAACACAAAAAGGGAGCAATTGCATGCAGAAGAGAACACAGtggaactgaactgaatcacacacacttacgcacttttttatttttttattttatctgttgATTCCTTTATTTCTGCTAAGTGTCTATGTTGCTGTACTGATAATCTCCTGGTCAATATAACCATAAGCTATTGAATTAAATCCAGCCATTTGTGTAACATGGTCTCTGTCACTGAAATTGCTTTTTAAGGTTTACCAGCTCTTTCACGAGCCTAGATCTGGTCCAAAACAATAAGTTGAACCACAAGGGTAGTGTCGAACCCGCTAcatgttactgaccaaaataaacgctttttaggagagatataagttatgtgtaaatatttataagacaatacctgacaaaatctgttttaatgatgttaataaacatcactgtgacagcgctagtcgcagtttcacc
>XR_002650592.1
AGGCAAACCcggtacagattcccctaattacatccacgcccaagcaaacactggtaatttacactGCTAGTAAATGAACACAAGAGTGTTTGTAACCCAGATATAAATACTGTGGAACCTACTATGGGTAGATGTCAGGattaattgtaaaatataagaaattgctaaatttaaatatacCTTACTACACAGtcactgtaaatgaaataataaaagaaattgaATTTCAGCTAAATCCTAATTATATATAACTGTAAATTAGTATTGGACCTTGTAAtcaattaacaattaattattcttagtaataaaaaatatatatatttttattaatttcacttcCTCTGTACTAAAGAGTGTTAGCCAATCAAATTCAGGCCCCTCCTACTACACTCACCACATAAGCTTCAGTACGAACTCCTCCTTCCTCTTTTCTCCGTGTGATTCATCCAGCACAGACATGAAGctgaattttctgttttattaaactagaaaaaataaagtaaagttactaaattaaattatattcgaGTGATAAACTGCATTTAAAGAGCCCTGGAGCCCCCCTTCTACACTTCATGTGTTACTGAGCTTTGGTCGGGTTTTATTGGATCCCTTGGAGCCTTGAGAAAGCTTGAGACAACGTCGGAGTGGGAAGTCTTCCCTTTTCCCTTCATGAACTCGGACGGTACTGATCCCTTCCGTCAGGGTATTGGATGCCTGGAACCTTGTGTTGTCTAACAGCTCTGATAACAGGACACCCCATTCATTAGTGTCCTTGGCGAGCCAGATTCTGAAACACAAAAAGGGAGCAATTGCATGCAGAAGAGAACACAGtggaactgaactgaatcacacacacttacgcacttttttatttttttattttatctgttgATTCCTTTATTTCTGCTAAGTGTCTATGTTGCTGTACTGATAATCTCCTGGTCAATATAACCATAAGCTATTGAATTAAATCCAGCCATTTGTGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139922 False 803 lncRNA 0.39 3 14374087 14375532
XR_002650592.1 True 991 lncRNA 0.36 3 14373654 14375287

Neighbor

gene id symbol gene type direction distance location
LOC103031792 LOC108439359,LOC107723198,LOC107564241,LOC107692626,LOC100334711 coding upstream 43239 14308926 ~ 14330415 (+)
LOC103031172 LOC103031172,LOC108439360 coding upstream 83495 14282927 ~ 14290159 (+)
LOC103033906 LOC108258922,LOC108439361,LOC107564279,LOC107692629,LOC107665976 coding upstream 129598 14223980 ~ 14244056 (+)
LOC111193619 NA coding upstream 312111 14051804 ~ 14061543 (+)
eif3f eif3f,LOC107723164,LOC107758850,LOC107665937 coding upstream 445856 13921248 ~ 13927798 (+)
knl1 NA coding downstream 12926 14388458 ~ 14409396 (+)
dmd LOC108439357 coding downstream 35151 14410683 ~ 14664759 (+)
LOC103039857 caly,LOC103039857,LOC108434710,LOC108258305,LOC105891014,LOC107583165,LOC107684294 coding downstream 1860496 16236028 ~ 16254238 (+)
LOC103039552 NA coding downstream 1945590 16321122 ~ 16325115 (+)
taf5 taf5,LOC102783881 coding downstream 1997258 16372790 ~ 16383498 (+)
G103505 NA non-coding upstream 29186 14343670 ~ 14344468 (+)
G103495 NA non-coding upstream 72365 14300862 ~ 14301289 (+)
G103477 NA non-coding upstream 82400 14290768 ~ 14291254 (+)
G103491 NA non-coding upstream 111676 14261603 ~ 14261978 (+)
G103488 NA non-coding upstream 114228 14258824 ~ 14259426 (+)
G103517 NA non-coding downstream 2227 14377759 ~ 14387696 (+)
G103524 NA non-coding downstream 56380 14431912 ~ 14510140 (+)
G103533 NA non-coding downstream 99675 14475207 ~ 14475622 (+)
G103544 NA non-coding downstream 168972 14544504 ~ 14545929 (+)
G103553 NA non-coding downstream 248110 14623642 ~ 14624134 (+)
G103490 LOC106510829 other upstream 112115 14260625 ~ 14261539 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other upstream 437987 13929065 ~ 13935667 (+)
sh3pxd2a sh3pxd2a other upstream 1341148 12851001 ~ 13032506 (+)
cryzl1 cryzl1 other upstream 1851351 12483622 ~ 12522303 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 2348890 12000639 ~ 12024764 (+)
G103551 NA other downstream 243103 14618635 ~ 14619082 (+)
G103561 NA other downstream 315511 14691043 ~ 14692199 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other downstream 623923 14999455 ~ 15297939 (+)
G104000 NA other downstream 2075643 16451175 ~ 16458209 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other downstream 2088406 16463938 ~ 16507787 (+)

Expression


Co-expression Network