G103554


Basic Information

Item Value
gene id G103554
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 14628264 ~ 14634284 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU139980
gactttgaggtgatggaggtaacgttagtaaagttaggattacacagggacttttgaggtgatggatgtaacgttagtaacgttaggataacacagagactttgaggtgatggaggtaatgttagtaactttaggataacacagagactttgaggtgatggaggtaatgttattaacgttaggataacacagggactttgaggtgatggaggtaacgttagtaaagtttggaatacacagggactttgaggtgatggggtaacgttagtaatgtaaggataacacagggactttgaggtgatggggtaacgTTAGCAATGTTatgataacacagggactttgagctGATGtgggtaacgttagtaacattaggataacacagggactttgaggtgattggGTAACGTTAGTGAACACATGGAGTTttatatacttaacaaaaaaaggtgaaatacataaaaaaatattttatattttagtcccttcaaaatagccaccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139980 True 499 lncRNA 0.38 3 14628264 14634284

Neighbor

gene id symbol gene type direction distance location
knl1 NA coding upstream 218868 14388458 ~ 14409396 (+)
LOC103031792 LOC108439359,LOC107723198,LOC107564241,LOC107692626,LOC100334711 coding upstream 297849 14308926 ~ 14330415 (+)
LOC103031172 LOC103031172,LOC108439360 coding upstream 338105 14282927 ~ 14290159 (+)
LOC103033906 LOC108258922,LOC108439361,LOC107564279,LOC107692629,LOC107665976 coding upstream 384208 14223980 ~ 14244056 (+)
LOC111193619 NA coding upstream 566721 14051804 ~ 14061543 (+)
LOC103039857 caly,LOC103039857,LOC108434710,LOC108258305,LOC105891014,LOC107583165,LOC107684294 coding downstream 1601744 16236028 ~ 16254238 (+)
LOC103039552 NA coding downstream 1686838 16321122 ~ 16325115 (+)
taf5 taf5,LOC102783881 coding downstream 1738506 16372790 ~ 16383498 (+)
pdcd11 pdcd11,LOC104950700 coding downstream 1753772 16388056 ~ 16418412 (+)
LOC103038100 NA coding downstream 1808674 16442958 ~ 16448489 (+)
G103553 NA non-coding upstream 4130 14623642 ~ 14624134 (+)
G103544 NA non-coding upstream 82335 14544504 ~ 14545929 (+)
G103524 NA non-coding upstream 118124 14431912 ~ 14510140 (+)
G103533 NA non-coding upstream 152642 14475207 ~ 14475622 (+)
G103517 NA non-coding upstream 240568 14377759 ~ 14387696 (+)
G103738 NA non-coding downstream 160962 14795246 ~ 14795613 (+)
G103746 NA non-coding downstream 168816 14803100 ~ 14805859 (+)
G103747 NA non-coding downstream 172200 14806484 ~ 14806972 (+)
G103748 NA non-coding downstream 173173 14807457 ~ 14808320 (+)
G103779 NA non-coding downstream 233662 14867946 ~ 14868171 (+)
G103551 NA other upstream 9182 14618635 ~ 14619082 (+)
G103490 LOC106510829 other upstream 366725 14260625 ~ 14261539 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other upstream 692597 13929065 ~ 13935667 (+)
sh3pxd2a sh3pxd2a other upstream 1595758 12851001 ~ 13032506 (+)
cryzl1 cryzl1 other upstream 2105961 12483622 ~ 12522303 (+)
G103561 NA other downstream 56759 14691043 ~ 14692199 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other downstream 365171 14999455 ~ 15297939 (+)
G104000 NA other downstream 1816891 16451175 ~ 16458209 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other downstream 1829654 16463938 ~ 16507787 (+)
LOC103037450 NA other downstream 1921410 16555694 ~ 16574433 (+)

Expression


Co-expression Network