G103748


Basic Information

Item Value
gene id G103748
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 14807457 ~ 14808320 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU140215
CCACCGGCTTCAGTCTGTCCCCATGTGCTTGCATCAATACAGACAACATACACCCCTGTCTTTCATCTACTGCTTGCACAAATGGTTTTGTTGGGTCCGGAAGGCCCAACACTGGCGTTGTTTGCAAAGCCAGTTTGATCTCCACAAAGGCTCTCTCAGCCTCTGGAGTCCAGTTCACCTTTGATGATGCAGTGAGGCCAGGGCTCAGGGTCATCTCACGCAGGGGTGCCTCTAGCAGAGAATAGTTTGGGATGAAAGTCCTGCAATAGGAACACATACCCATGAATGACATCACTTGTTTCTTAGTAACAGGTTTAGGTAGGCTTTGAATGACTGATATTCGGTCAACGGACAGTTGTTTACCCTCTGCTGAGATGTCATGGCCCAAAAATCTCACAGATTGTTTTACAAACTGTAGTTTTGACAAGCTAGCCTTGTGGCCTTCTGCTGCCAGGTGCTGGAGCAGTTTAATAGTGTCAGCTTCACACTGTTGCTGTGTGGTTGACGCAAGAATTATATCATCAACATAACAGCAGATGGCGCTATTTTGGCTTAACACCAATGAATCCAGACTATTTTTCAGAGTTTGGTTAAAAATTGTAGGTGCATCACAAAAACCTTGGCACAGACGTGTAAAAGTGAAGCACCTATCACCAAACTTGAAAGCAAACCAGAACTGACTATCCTTGTGCACAGGAATACTAAAGAAAGCGTTGGCTAGGTCGACCACTGAAAACCATTTACAGTTACTAGGTATCTGTGAGAGAATTGTGTAAGGATTTGGAACATCTGGTGCTCTCTGCACCACTGCTGCATTTACAGCTTGCAGGTCCTGCACAAAACGCCAATCATCAGGCTGTGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140215 True 864 lncRNA 0.46 1 14807457 14808320

Neighbor

gene id symbol gene type direction distance location
dmd LOC108439357 coding upstream 142698 14410683 ~ 14664759 (+)
knl1 NA coding upstream 398061 14388458 ~ 14409396 (+)
LOC103031792 LOC108439359,LOC107723198,LOC107564241,LOC107692626,LOC100334711 coding upstream 477042 14308926 ~ 14330415 (+)
LOC103031172 LOC103031172,LOC108439360 coding upstream 517298 14282927 ~ 14290159 (+)
LOC103033906 LOC108258922,LOC108439361,LOC107564279,LOC107692629,LOC107665976 coding upstream 563401 14223980 ~ 14244056 (+)
LOC103039857 caly,LOC103039857,LOC108434710,LOC108258305,LOC105891014,LOC107583165,LOC107684294 coding downstream 1427708 16236028 ~ 16254238 (+)
LOC103039552 NA coding downstream 1512802 16321122 ~ 16325115 (+)
taf5 taf5,LOC102783881 coding downstream 1564470 16372790 ~ 16383498 (+)
pdcd11 pdcd11,LOC104950700 coding downstream 1579736 16388056 ~ 16418412 (+)
LOC103038100 NA coding downstream 1634638 16442958 ~ 16448489 (+)
G103747 NA non-coding upstream 485 14806484 ~ 14806972 (+)
G103746 NA non-coding upstream 1598 14803100 ~ 14805859 (+)
G103738 NA non-coding upstream 11844 14795246 ~ 14795613 (+)
G103554 NA non-coding upstream 173173 14628264 ~ 14634284 (+)
G103552 NA non-coding upstream 174234 14625158 ~ 14633223 (+)
G103779 NA non-coding downstream 59626 14867946 ~ 14868171 (+)
G103792 NA non-coding downstream 80793 14889113 ~ 14889312 (+)
G103833 NA non-coding downstream 186422 14994742 ~ 14994972 (+)
G103835 NA non-coding downstream 194426 15002746 ~ 15003753 (+)
G103866 NA non-coding downstream 572961 15381281 ~ 15381522 (+)
G103561 NA other upstream 115258 14691043 ~ 14692199 (+)
G103551 NA other upstream 188375 14618635 ~ 14619082 (+)
G103490 LOC106510829 other upstream 545918 14260625 ~ 14261539 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other upstream 871790 13929065 ~ 13935667 (+)
sh3pxd2a sh3pxd2a other upstream 1774951 12851001 ~ 13032506 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other downstream 191135 14999455 ~ 15297939 (+)
G104000 NA other downstream 1642855 16451175 ~ 16458209 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other downstream 1655618 16463938 ~ 16507787 (+)
LOC103037450 NA other downstream 1747374 16555694 ~ 16574433 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other downstream 2080066 16888386 ~ 16894592 (+)

Expression


Co-expression Network