G103873


Basic Information

Item Value
gene id G103873
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 15501206 ~ 15504686 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU140353
attgatgtaatgaatataattttttaatcattgttaATTAGTTCTTGTGTTAGTTTACCAGTGTAAGCATGTCAGTTTACCCTGTAAGCAATCTTTAGACCAGACATAGCGGTGCCAGGTGTCAAGCTGGGTAATAATAACCTATGGTTAGGAGCATGGGGCAAAGGTCAAAACTCCTTAACAGAGCAAGACATCTGTTTTTGGGACTGATGGTTGAAGGTCCTTTGTTTCTGGTACACCTCCCCCACTAAACACTATTTAGCcaatgtgtgtgaatgagttagagagagagacagcgttgGTGTTGGAGGTGAGACTGGCTGGGAGAGCTGCTGGACAGCCGTAAGGCTGTACTAAGGCTGGACCATGCTTGTCTCAGTGTCCATGCTTTAAACAACTATCCGAATAAAGCTACAATCTTCCTGCAATAACGATCTCTGAGACTCCTTTCTTCTGCAATCTACATCTACAAGAACTGGTACGTTGTTGAACAGCAGACGTCAGCAGACGTCAAGAAGATCTAGTGTTCTCTTCACTGCTTCACTGACCCATTTAGAGAAATCTAAATGTGTGGTTAAGAAGACAGAAGTAAGCACCAAGAAAAGAATACAACAATTTGGCGTCACGAACAGGATCAGTTAAATCACTGAATTCAATTCACAATTTGGTGAATTGATGTGACACTGATCAGAAGAACTGTGGTGCAACTTCAAGAGAACTGAAGAACTCTGCTGAAGCAAGAAGGGAGATCTCCAATCCAAGTCAAGCCAAGCCAGGGGAGTGAAGTCCACCCCTCCTCCTGATCCTTCTGCTGCTAGAggtgtctgctgctgctggaagtGTGAAGAACTCTGCTGATCTGCTGCCAGAGACGTCTGTGAGGCAGATAAGAGCCACTTCCATTTCTCCACCAAGAATATTTGGTGAGTATGACCACCACACACCATtagcagagaaagaaaagaaaaagcctAAGACAAAAGCACACCTAGAATTGTCTTATGAATAAGTCAGAAAttcataaaagtaaaagtaaaggaataaaaaaatattcaacaaCTAAGCAAAATATGGTACCTAATCACCACTGCTGGTTCAGTGAGtgagaagaaaaataagaaattgaGAGATCtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtcTGTTTGGTACTGCTAGAAGCTTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtctgtttgttactgctagaagctTCAAaatagtaactgttatcctctctgaactgagagatgtcTAAATGTGTGGTTAAGAAGACAGAAGTAAGCACCAAGAAAAGAATAcaacaat

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140353 True 3295 lncRNA 0.39 2 15501206 15504686

Neighbor

gene id symbol gene type direction distance location
dmd LOC108439357 coding upstream 836447 14410683 ~ 14664759 (+)
knl1 NA coding upstream 1091810 14388458 ~ 14409396 (+)
LOC103031792 LOC108439359,LOC107723198,LOC107564241,LOC107692626,LOC100334711 coding upstream 1170791 14308926 ~ 14330415 (+)
LOC103031172 LOC103031172,LOC108439360 coding upstream 1211047 14282927 ~ 14290159 (+)
LOC103033906 LOC108258922,LOC108439361,LOC107564279,LOC107692629,LOC107665976 coding upstream 1257150 14223980 ~ 14244056 (+)
LOC103039857 caly,LOC103039857,LOC108434710,LOC108258305,LOC105891014,LOC107583165,LOC107684294 coding downstream 731342 16236028 ~ 16254238 (+)
LOC103039552 NA coding downstream 816436 16321122 ~ 16325115 (+)
taf5 taf5,LOC102783881 coding downstream 868104 16372790 ~ 16383498 (+)
pdcd11 pdcd11,LOC104950700 coding downstream 883370 16388056 ~ 16418412 (+)
LOC103038100 NA coding downstream 938272 16442958 ~ 16448489 (+)
G103866 NA non-coding upstream 119684 15381281 ~ 15381522 (+)
G103835 NA non-coding upstream 497453 15002746 ~ 15003753 (+)
G103833 NA non-coding upstream 506234 14994742 ~ 14994972 (+)
G103792 NA non-coding upstream 611894 14889113 ~ 14889312 (+)
G103779 NA non-coding upstream 633035 14867946 ~ 14868171 (+)
G103874 NA non-coding downstream 66610 15571296 ~ 15577996 (+)
G103875 NA non-coding downstream 74467 15579153 ~ 15580096 (+)
G103929 NA non-coding downstream 355825 15860511 ~ 15860722 (+)
G103940 NA non-coding downstream 488431 15993117 ~ 16051402 (+)
G103943 NA non-coding downstream 575044 16079730 ~ 16080160 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other upstream 203267 14999455 ~ 15297939 (+)
G103561 NA other upstream 809007 14691043 ~ 14692199 (+)
G103551 NA other upstream 882124 14618635 ~ 14619082 (+)
G103490 LOC106510829 other upstream 1239667 14260625 ~ 14261539 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other upstream 1565539 13929065 ~ 13935667 (+)
G104000 NA other downstream 946489 16451175 ~ 16458209 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other downstream 959252 16463938 ~ 16507787 (+)
LOC103037450 NA other downstream 1051008 16555694 ~ 16574433 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other downstream 1383700 16888386 ~ 16894592 (+)
LOC103031769 prps2 other downstream 1615161 17119847 ~ 17138973 (+)

Expression


Co-expression Network