G103972


Basic Information

Item Value
gene id G103972
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 16258785 ~ 16258998 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU140473
ACCGGAAACAGAAGTTCGGGGACGATTTGAatgcctttttttgtttgtgatgCTTGAACTCCCTTTGCCCTGTCAGGAATCGTATGCTTCTATGAACCATATAGAATGCTTTTTTATTGGGAtgtcacagtaaaaaaaaatctgcagtgAACCACCCTGGCACTCACCTTACCcaccaacccccaccagagcccacCCACAAAACGAGTTGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140473 True 214 lncRNA 0.45 1 16258785 16258998

Neighbor

gene id symbol gene type direction distance location
LOC103039857 caly,LOC103039857,LOC108434710,LOC108258305,LOC105891014,LOC107583165,LOC107684294 coding upstream 4547 16236028 ~ 16254238 (+)
dmd LOC108439357 coding upstream 1594026 14410683 ~ 14664759 (+)
knl1 NA coding upstream 1849389 14388458 ~ 14409396 (+)
LOC103031792 LOC108439359,LOC107723198,LOC107564241,LOC107692626,LOC100334711 coding upstream 1928370 14308926 ~ 14330415 (+)
LOC103031172 LOC103031172,LOC108439360 coding upstream 1968626 14282927 ~ 14290159 (+)
LOC103039552 NA coding downstream 62124 16321122 ~ 16325115 (+)
taf5 taf5,LOC102783881 coding downstream 113792 16372790 ~ 16383498 (+)
pdcd11 pdcd11,LOC104950700 coding downstream 129058 16388056 ~ 16418412 (+)
LOC103038100 NA coding downstream 183960 16442958 ~ 16448489 (+)
LOC103037127 NA coding downstream 317845 16576843 ~ 16601035 (+)
G103945 NA non-coding upstream 172941 16085643 ~ 16085844 (+)
G103943 NA non-coding upstream 178625 16079730 ~ 16080160 (+)
G103940 NA non-coding upstream 207383 15993117 ~ 16051402 (+)
G103929 NA non-coding upstream 398063 15860511 ~ 15860722 (+)
G103875 NA non-coding upstream 678689 15579153 ~ 15580096 (+)
LOC111193544 NA non-coding downstream 174811 16433809 ~ 16437632 (+)
G104001 NA non-coding downstream 285258 16544256 ~ 16546010 (+)
G104082 LOC107662997,LOC107757412,LOC108434698,LOC107707084 non-coding downstream 423742 16682740 ~ 16687373 (+)
G104144 NA non-coding downstream 601990 16860988 ~ 16861202 (+)
G104151 NA non-coding downstream 668226 16927224 ~ 16934483 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other upstream 960846 14999455 ~ 15297939 (+)
G103561 NA other upstream 1566586 14691043 ~ 14692199 (+)
G103551 NA other upstream 1639703 14618635 ~ 14619082 (+)
G103490 LOC106510829 other upstream 1997246 14260625 ~ 14261539 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other upstream 2323118 13929065 ~ 13935667 (+)
G104000 NA other downstream 192177 16451175 ~ 16458209 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other downstream 204940 16463938 ~ 16507787 (+)
LOC103037450 NA other downstream 296696 16555694 ~ 16574433 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other downstream 629388 16888386 ~ 16894592 (+)
LOC103031769 prps2 other downstream 860849 17119847 ~ 17138973 (+)

Expression


Co-expression Network