G104000


Basic Information

Item Value
gene id G104000
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 16451175 ~ 16458209 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU140510
gaaaattaacaatttagaataaaagtgttttcagcCTGGATTTAAAAGTGTCTAGTATTGGGGCTCTACCATCACCCTCTGtcaactggttccatttaagagcagcatAGCAGCTTCCtctccatgtttagtttttactggtCACTAACTGACCAGTTCCTGATGAACTGAGTGTTCTGCTCAGCTCATATTGCTGAAGCACATCAAATAAATATGCTGGCCCTGCACCATTCAGACATATGGGCTACGTTTACGTTTACAAGCCAAGTTGTAAGTGAACTGTATCTGTGTGCAATGTGTTAACGAATCTGTTTCTGAAACGCCTcccatgcgcacattgatacgcgtataaacgtctccttcacaaacaacaaaaaggtcatttttgagagacgacttgtagctttataaaaGGAAACAGAtgcattagcagctcatatgtggagcatcttttgctggagtggagaggaAATAggtggtctgaagtacatgctctggtcgaggaggtgaaaataGGCCGGCCGGTTTGCTTTAGATccgagtcacttcagcctggtaatgtgaacacagccaTATAGACCTTATAGTAACTTAAGTCTGTTATGAAACATACCAAAGAAAAGAACTGGTTTACTACATACACAAGCTTCTGATGCAAAACTCATGCATGAATCAATCTTGCTTAATAGCTACAGACAAGAccagttttgtttaaaatttccttcattgtttttattatattattttcttaatCCACTTCCTTCAGCAATTATTACACACAATGCATTCCCTCtgctttattattgtaaaacaatgaatgatgaatgaattaatgaacaGGCTTCATTAGTCCCCGTTTTATTCAGGCCATtaaacagagacaaaaaaaaaatcaaaaggtaCCCTCAACACCTGTAGCTTTCTTTGGCACAGAAGACTTGCTTTGTTTTCACTTGCTCATGGTCATCCTTCTCATACAATTTCCCAAGGATTGCTGGAAATCATCATAGTTGCTGTATCTGAGGACTCTGGGGCAGGGCAGGAAGTGTCACAACAAGTACAGACAGAGTCATCTCCCAGCAGCTCAGTCCACCTTTTAGTACTGAGATCATATGTGCACGATTTTGCACTTGGAGTTGGTGTTTGTGGCCCCAAGGTCATCTCACAATGAACAAACATGATCCTCTTATCTTTTGGCTGCGAGATCAGGTCCTTGAACAAAACAGACGCCACAGAGAACCTAACTGTGCTCTCATCAGTGCTGGGATAGAACTTGGATTGAGCATTTTGTTTGCCATCAACCAAGCAGCCATAGTTGTCCAACACAGTATAGGTAGGTGTAGCTGTGAGGTCTTCAGAAGCAGAGATGTAGCACTTGTTCAGGTAAACCCTCCTCCCTGCTGTATCCCTGCTGTGGGCCTTGACTTCAAAGTACATGGGCTCACCAATACTGTAACTACGTACAGGGAGGAGAACATCCCCGCGTtCATCTACATGTGTGATGGACGCTCCTGATGTTAGCCCGACGAAGATGGTTTCTTTAAAAACTTCCGGATAGAAGCCCAACTGGTAGGAGCGGTGATGCTTGTGGTAATGGCATTCCAGTCCCACAGAAAAAGGCAGCTCTCGAACCACCAACTCTGTGGTCTCTTCAGGCTCATAGCGGAGAGTGTTGGAATAGATCACACTGTCCTGATTTTCTTGCCGTTGTCCATCACAGCCATTGAGAGCATAGAGAACGTAGTAGTGGGTATCTGTGGCCTGATTCACAGCACAGCTTCCCACTTTGAGATATTTGTAAGCATCAGGGTTGGTAAACAGGCTCTTTAAAACTCTCACATAAATGCGGTCAAGGTGGCACAGCATTCCCACTGGTTTGTATGTAGAAGTTGAAGATTTTGGAGGCTTGGCTTCTGATGGATGAAACACAGGATACAGTAAATCAGGTACCCGTTTAAGATCCTGGTCTGGTCTGAATAGATCCATTTGGACTTCTGAAGCTGTGATTCTCTGATACTCTGGTAGGTTCATGGCTGGACGTGGAGTTACAGGGTCCAGAGGGACTTTAATATCTGCTGCAAAAAGACCATCATTTGGGATAAAATGAGGGTCAACCTTGTAAATCAGGGTCATAAAAGTAAAGGCAATTTTCTGCAGCATTTTGGCCATTTTACAGCAGTTTACAACCCCAGCACCTACTCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140510 True 2203 TUCP 0.43 8 16451175 16458209

Neighbor

gene id symbol gene type direction distance location
LOC103038100 NA coding upstream 2686 16442958 ~ 16448489 (+)
pdcd11 pdcd11,LOC104950700 coding upstream 32763 16388056 ~ 16418412 (+)
taf5 taf5,LOC102783881 coding upstream 67677 16372790 ~ 16383498 (+)
LOC103039552 NA coding upstream 126060 16321122 ~ 16325115 (+)
LOC103039857 caly,LOC103039857,LOC108434710,LOC108258305,LOC105891014,LOC107583165,LOC107684294 coding upstream 196937 16236028 ~ 16254238 (+)
LOC103037127 NA coding downstream 118634 16576843 ~ 16601035 (+)
LOC103036820 NA coding downstream 153392 16611601 ~ 16625584 (+)
LOC111188171 zc3h12c coding downstream 170480 16628689 ~ 16662345 (+)
LOC103036216 NA coding downstream 332539 16790748 ~ 16798890 (+)
LOC103035380 NA coding downstream 345699 16803908 ~ 16816495 (+)
LOC111193544 NA non-coding upstream 13543 16433809 ~ 16437632 (+)
G103972 NA non-coding upstream 192177 16258785 ~ 16258998 (+)
G103945 NA non-coding upstream 365331 16085643 ~ 16085844 (+)
G103943 NA non-coding upstream 371015 16079730 ~ 16080160 (+)
G103940 NA non-coding upstream 399773 15993117 ~ 16051402 (+)
G104001 NA non-coding downstream 86047 16544256 ~ 16546010 (+)
G104082 LOC107662997,LOC107757412,LOC108434698,LOC107707084 non-coding downstream 224531 16682740 ~ 16687373 (+)
G104144 NA non-coding downstream 402779 16860988 ~ 16861202 (+)
G104151 NA non-coding downstream 469015 16927224 ~ 16934483 (+)
G104162 NA non-coding downstream 588563 17046772 ~ 17047740 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other upstream 1153236 14999455 ~ 15297939 (+)
G103561 NA other upstream 1758976 14691043 ~ 14692199 (+)
G103551 NA other upstream 1832093 14618635 ~ 14619082 (+)
G103490 LOC106510829 other upstream 2189636 14260625 ~ 14261539 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other upstream 2515508 13929065 ~ 13935667 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other downstream 5729 16463938 ~ 16507787 (+)
LOC103037450 NA other downstream 97485 16555694 ~ 16574433 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other downstream 430177 16888386 ~ 16894592 (+)
LOC103031769 prps2 other downstream 661638 17119847 ~ 17138973 (+)
LOC111193547 NA other downstream 948386 17406595 ~ 17419138 (+)

Expression


Co-expression Network