G104001


Basic Information

Item Value
gene id G104001
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 16544256 ~ 16546010 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU140512
cgttttttagcggcgtcagttcactgcagccctgaacatagccgggctacgtcagtgcgtgatgacgcaatcatacaggcacgtagccagctaggctaggctaggctaaaccTGGGTCGCCTTCTCTCCGCaccgcacctaaaatctcccgcgatgaagcgaaaccgaccctaaccgagcggatctccgctccgcacctaaaacccgcccgccttgaagcgaaaccgaccctaaccgagcggatctccgctccgctccgcacctaaaatccgcccgcgatgaaacgaaaccgaccctaaccgaacggatctcggctgcgctccgctccgcacctaaaacccgcccgcgatgaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140512 True 355 lncRNA 0.60 2 16544256 16546010

Neighbor

gene id symbol gene type direction distance location
LOC103038100 NA coding upstream 95767 16442958 ~ 16448489 (+)
pdcd11 pdcd11,LOC104950700 coding upstream 125844 16388056 ~ 16418412 (+)
taf5 taf5,LOC102783881 coding upstream 160758 16372790 ~ 16383498 (+)
LOC103039552 NA coding upstream 219141 16321122 ~ 16325115 (+)
LOC103039857 caly,LOC103039857,LOC108434710,LOC108258305,LOC105891014,LOC107583165,LOC107684294 coding upstream 290018 16236028 ~ 16254238 (+)
LOC103037127 NA coding downstream 30833 16576843 ~ 16601035 (+)
LOC103036820 NA coding downstream 65591 16611601 ~ 16625584 (+)
LOC111188171 zc3h12c coding downstream 82679 16628689 ~ 16662345 (+)
LOC103036216 NA coding downstream 244738 16790748 ~ 16798890 (+)
LOC103035380 NA coding downstream 257898 16803908 ~ 16816495 (+)
LOC111193544 NA non-coding upstream 106624 16433809 ~ 16437632 (+)
G103972 NA non-coding upstream 285258 16258785 ~ 16258998 (+)
G103945 NA non-coding upstream 458412 16085643 ~ 16085844 (+)
G103943 NA non-coding upstream 464096 16079730 ~ 16080160 (+)
G103940 NA non-coding upstream 492854 15993117 ~ 16051402 (+)
G104082 LOC107662997,LOC107757412,LOC108434698,LOC107707084 non-coding downstream 136730 16682740 ~ 16687373 (+)
G104144 NA non-coding downstream 314978 16860988 ~ 16861202 (+)
G104151 NA non-coding downstream 381214 16927224 ~ 16934483 (+)
G104162 NA non-coding downstream 500762 17046772 ~ 17047740 (+)
G104177 NA non-coding downstream 636286 17182296 ~ 17182538 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 36469 16463938 ~ 16507787 (+)
G104000 NA other upstream 86047 16451175 ~ 16458209 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other upstream 1246317 14999455 ~ 15297939 (+)
G103561 NA other upstream 1852057 14691043 ~ 14692199 (+)
G103551 NA other upstream 1925174 14618635 ~ 14619082 (+)
LOC103037450 NA other downstream 9684 16555694 ~ 16574433 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other downstream 342376 16888386 ~ 16894592 (+)
LOC103031769 prps2 other downstream 573837 17119847 ~ 17138973 (+)
LOC111193547 NA other downstream 860585 17406595 ~ 17419138 (+)
G104656 pcdh8 other downstream 2373050 18919060 ~ 18923203 (+)

Expression


Co-expression Network