G104082 (LOC107662997,LOC107757412,LOC108434698,LOC107707084)


Basic Information

Item Value
gene id G104082
gene name LOC107662997,LOC107757412,LOC108434698,LOC107707084
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 16682740 ~ 16687373 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU140633
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttctggagaGGAGCATTACCTTGTGCTGCCATTCCGAGGcctcctcctcttttttcctcttggCGTCCTCCAGCAGGGCGATTTTGGCGGTGAACTCCCCCAGTTCTGCAGCCAGTTGCTCCTGGTTCTTCATCTGGTCGGCAGCCTGTTGAGCTAGTGCTGCTTTGGCCTCCTCAGCAgccagtttctctctctccagccgtTCTGCCTCCTCCTtcgctctcttcctctcttgaTCCAACTCCAGAGCCCGACGCGTctgctcctccagctCTTTCTGTGCTTTTATCGTTTGCTCTTCAATTTGTCTCAGTCGCTCGATCAGCTCGTCCTTCTCACGTTCtattctttccttctctttttctgcgtGCTCTCGCTTCTTCTTTTCGTTTTCGAGTTGGGCCCTCTCCATCTGTTTCTGGTGTTTTTCCTCTCTTGCCTGGGCCTTCATCTGCTGCACCTCAATGGTGTCTGGTTTTCTTCTCCTCATGTACAGCTCATGATTACCCATGC

Function

NR:

description
PREDICTED: radixin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140633 True 543 lncRNA 0.52 4 16682740 16687373

Neighbor

gene id symbol gene type direction distance location
LOC111188171 zc3h12c coding upstream 20395 16628689 ~ 16662345 (+)
LOC103036820 NA coding upstream 57156 16611601 ~ 16625584 (+)
LOC103037127 NA coding upstream 81705 16576843 ~ 16601035 (+)
LOC103038100 NA coding upstream 234251 16442958 ~ 16448489 (+)
pdcd11 pdcd11,LOC104950700 coding upstream 264328 16388056 ~ 16418412 (+)
LOC103036216 NA coding downstream 103375 16790748 ~ 16798890 (+)
LOC103035380 NA coding downstream 116535 16803908 ~ 16816495 (+)
vangl1 vangl1,LOC107552384,LOC107748077,LOC107588836 coding downstream 222275 16909648 ~ 17020202 (+)
poglut1 poglut1 coding downstream 362056 17049429 ~ 17060160 (+)
timmdc1 timmdc1 coding downstream 378029 17065402 ~ 17076913 (+)
G104001 NA non-coding upstream 136730 16544256 ~ 16546010 (+)
LOC111193544 NA non-coding upstream 245108 16433809 ~ 16437632 (+)
G103972 NA non-coding upstream 423742 16258785 ~ 16258998 (+)
G103945 NA non-coding upstream 596896 16085643 ~ 16085844 (+)
G103943 NA non-coding upstream 602580 16079730 ~ 16080160 (+)
G104144 NA non-coding downstream 173615 16860988 ~ 16861202 (+)
G104151 NA non-coding downstream 239851 16927224 ~ 16934483 (+)
G104162 NA non-coding downstream 359399 17046772 ~ 17047740 (+)
G104177 NA non-coding downstream 494923 17182296 ~ 17182538 (+)
G104183 LOC103030517,LOC108434725,LOC100705727,LOC101474240,LOC102192248,LOC103374257,LOC106510766 non-coding downstream 667056 17354429 ~ 17356491 (+)
LOC103037450 NA other upstream 108307 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 174953 16463938 ~ 16507787 (+)
G104000 NA other upstream 224531 16451175 ~ 16458209 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other upstream 1384801 14999455 ~ 15297939 (+)
G103561 NA other upstream 1990541 14691043 ~ 14692199 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other downstream 201013 16888386 ~ 16894592 (+)
LOC103031769 prps2 other downstream 432474 17119847 ~ 17138973 (+)
LOC111193547 NA other downstream 719222 17406595 ~ 17419138 (+)
G104656 pcdh8 other downstream 2231687 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 3046853 19734226 ~ 19744924 (+)

Expression


Co-expression Network