G53092


Basic Information

Item Value
gene id G53092
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 4620939 ~ 4633711 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU60467
TGGGACTATTTAGGGAAATAATTGTGTTTGCAACTGTTTGGTGATGCTAGTGGTACAGAAATAATACATCTCAGTTGTTAAGACCCCAAGATGTGATAAAGTTACCTGTTCCGAGGCAATTTCTCTCGTCTTCCCCTGTCTTACAGTCTTCCTGACCATCACACAACCATTTACGTGAGATGCAGAGATTATTGTGGCATTGAAACTGATCCTCTGCACAATGAGTCTCACAATCCTTCTCATCTGAATTATCAGCGCAGTCATAGTCACCATCGCAACGGAAGCGTGCTGAGATACAGTCCCCATTGGCACAGGCAAAATCCTTATGATTACAGGTCACCGGCTTGCAATGCTCCTCATCGGAGTTGTCTCCACAGTCATTCTGGCTGTCACATCTCCAGTGGTCCGGGATGCAGTTGTTATTCTCACAGCGAAATTCATGAGGTCCACAGGTCTTTTCATCACAATTGGCCTCGTCAGAGCCGTCAGCACAGTCCGGGTCCTCGTCACACACCCAGAGCTTTGAGATGCAATGCATGGTGGCCTTGCACTGGAACTGGTCTGGAGAACATGTGCTCTCAGGGCAGTCTGTCTCATCCTCGCCATCCCCACAGTCATCCTGTCCATTGCAACGAAGATTTAATGGTATACACTTCTGCTTTCTGGTGCACTTGAACTGTCCTGACAGACAGATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU60467 True 695 lncRNA 0.30 5 4620939 4633711

Neighbor

gene id symbol gene type direction distance location
CI01000009_04196309_04197268 DNAJC28 coding downstream 423671 4196309 ~ 4197268 (-)
CI01000009_04069741_04071278 NA coding downstream 549335 4069714 ~ 4071604 (-)
CI01000009_04015167_04016764 NA coding downstream 604102 4015005 ~ 4016837 (-)
CI01000009_03791699_03858262 NCAM2 coding downstream 761705 3790698 ~ 3859234 (-)
CI01000009_03770045_03770497 NA coding downstream 850442 3769910 ~ 3770497 (-)
CI01000009_04738315_04741396 RALB.S, RALBA, RALB.L, RALB coding upstream 104518 4738229 ~ 4742426 (-)
CI01000009_04778332_04780190 NA coding upstream 144342 4778053 ~ 4786216 (-)
CI01000009_04888729_04895882 NA coding upstream 254486 4888197 ~ 4896479 (-)
CI01000009_04976520_04987680 NA coding upstream 342775 4976486 ~ 4987707 (-)
CI01000009_05046374_05094978 SEMA5B, SEMA5BA coding upstream 412589 5046300 ~ 5095973 (-)
G53090 NA non-coding downstream 1954 4618590 ~ 4618985 (-)
G53088 NA non-coding downstream 11020 4606558 ~ 4609919 (-)
G53081 NA non-coding downstream 24634 4589974 ~ 4596305 (-)
G53068 NA non-coding downstream 63383 4546991 ~ 4557556 (-)
G53055 NA non-coding downstream 81750 4514881 ~ 4539189 (-)
G53100 NA non-coding upstream 823 4634534 ~ 4638036 (-)
G53101 NA non-coding upstream 8457 4642168 ~ 4643117 (-)
G53112 NA non-coding upstream 31759 4665470 ~ 4665824 (-)
G53119 NA non-coding upstream 42750 4676461 ~ 4676686 (-)
G53124 NA non-coding upstream 46646 4680357 ~ 4680665 (-)
G52828 NA other downstream 389470 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 1358982 3261038 ~ 3262843 (-)
CI01000009_02885473_02893975 NA other downstream 1721532 2883688 ~ 2893975 (-)
G52410 NA other downstream 2058406 2551724 ~ 2562533 (-)
G53515 NA other upstream 868684 5502395 ~ 5505248 (-)
G55814 NA other upstream 3792110 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 4224441 8856310 ~ 8860563 (-)
G59097 NA other upstream 7654506 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 9341677 13975099 ~ 13978614 (-)

Expression


Co-expression Network