G104151


Basic Information

Item Value
gene id G104151
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 16927224 ~ 16934483 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU140723
ttcatcagctctctagcgccacctattttatatcatatttatgaaaagctctcagcctcttgatgattggcagattcaataagtctttgaaatgatttaggaatattttgtcGTTTTTCTCATGTTGTAGCTAGAGGACTACAGCGCCCCTATTTTGTTTAGGCCATTAAATTAGCTGTAGCTGTCTCAAAATTTCTCCAATATTCTCGATTTTTGGCAACAACATAGAAACTATCATCCCGCACATATTACCCTTTGGCTTGTactagctccgcccaacaggaagtcggccattttgaaatttgtggaatttttacacatttttcacgaactcattcaaactcctcctagagtctttgtcataTTACCTCTAAATTTGGTATGGATAGGCTCCAGACATACatggtgataaattgcgaaggaatagtcgatagctgaaacgatgacgtaatggcggacaattaatttaatggagacgcaacactagaccaaagtgaaaccatgacacagtcataaaacagattattgaaaaatcatgaaacttggtaaaaacacaagagacatcataagacacgtttttagtattggaatgattgactccgcccaacaggaagtcggccattttgaaatatgtgcattttacacacattttttgcatactttgtttTCCCCCCCCcctcgaactcctcctagggaatttgttgaatactcttgatatttgtcagtaataaactactaacacacctgatgataaattgcgaaggaatagtcgatatcttaaacgaggacgaaatggcggacagttgaattgcttgagatgccccgttaaaacaggaagtgaatacattctggtgttagtaggtgtttgaggaggttaaaaaggttgaaaactctcgaaaatttacaggcctgcttgatttaagcagtagtttgatctgaaattaaaatttcatatatacgtatttcattggctctatagcgccacctaggtttcaatgcatatttgacattacgggaatgctcaaaacctcttgaaaattgacagattgcataagacctaaaaacactttacaaatattttgacaattttttcatgtatagctagcggactctacagcgccccctaatttgttcatttaataaattagctgtggatgtgtcaaaatttgtctaatcttctcaaattttggtaggagtgtagatagtatgaccctgcacatatttgcaattggcttgtattagctccgcccaacaggaagtcggccatattggaatttgtgaaatttttacatatttttcacaaactcatttaagCTGCTTCTTAAGTCTTAGGTAGATTACCTTTTAATTAGCTGTGAATGAACATCAGACATGTTTGATGAAAATTgccaaaggattagttgatcgCTAAAACGGTGATGTAATGGCGAGCATTTGAttcactagagacgcaacactaaaccaaagtgaaacaaTGACACGGTCCgaacacagatgattgaaaattcctgaaacttggcaaaaacacaagagacatcattagacacgttttcagtatttgtaggactgactccgcccaacaggaagtcggccattttgaaacatctgcattttacacacattctttgcgtatgttgtcaaactactcctagaaaaTTTaatgaattctcttggtatttggtaaaaataaacattgaacatatctgatgacaaattgtgaaggaatagtcgatatcttaaacgaggacgaaatgacGGACGGTTGAATTTTTGAGATGCCACCTCAAAACAGGAAGTTGACACCTAGGTAATGCAAGGTGTTTTGAGGAGGTTATAACTGAGGaaaactcacaaaatttgaccggcctgcttatCTGAGGCTGTTCTTTGATGTaggattaaaatttaaaatacatgtGCTTTCACAGCTCTATACCGCCacctatattttaaatgaatatttgaCAGGATAGAAAACTGTTGAAAATTGTCACACTTAATAAGCCCCTAAAATTACTTGCACCGGTTTCTCGATCtggcccggtacgatttgcgctgttatgcgagggccctacgtccccctgtgacagggggac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140723 True 2096 lncRNA 0.38 2 16927224 16934483

Neighbor

gene id symbol gene type direction distance location
LOC103035380 NA coding upstream 110729 16803908 ~ 16816495 (+)
LOC103036216 NA coding upstream 128334 16790748 ~ 16798890 (+)
LOC111188171 zc3h12c coding upstream 264879 16628689 ~ 16662345 (+)
LOC103036820 NA coding upstream 301640 16611601 ~ 16625584 (+)
LOC103037127 NA coding upstream 326189 16576843 ~ 16601035 (+)
poglut1 poglut1 coding downstream 114946 17049429 ~ 17060160 (+)
timmdc1 timmdc1 coding downstream 130919 17065402 ~ 17076913 (+)
LOC103032412 gk,LOC107742635,LOC107700103,LOC107667651 coding downstream 146718 17081201 ~ 17109560 (+)
LOC103032094 NA coding downstream 178827 17113310 ~ 17117221 (+)
chst10 chst10 coding downstream 208050 17142533 ~ 17149608 (+)
G104144 NA non-coding upstream 66022 16860988 ~ 16861202 (+)
G104082 LOC107662997,LOC107757412,LOC108434698,LOC107707084 non-coding upstream 239851 16682740 ~ 16687373 (+)
G104001 NA non-coding upstream 381214 16544256 ~ 16546010 (+)
LOC111193544 NA non-coding upstream 489592 16433809 ~ 16437632 (+)
G103972 NA non-coding upstream 668226 16258785 ~ 16258998 (+)
G104162 NA non-coding downstream 112289 17046772 ~ 17047740 (+)
G104177 NA non-coding downstream 247813 17182296 ~ 17182538 (+)
G104183 LOC103030517,LOC108434725,LOC100705727,LOC101474240,LOC102192248,LOC103374257,LOC106510766 non-coding downstream 419946 17354429 ~ 17356491 (+)
G104190 NA non-coding downstream 547641 17482124 ~ 17485186 (+)
G104196 NA non-coding downstream 662665 17597148 ~ 17597444 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 32632 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 352791 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 419437 16463938 ~ 16507787 (+)
G104000 NA other upstream 469015 16451175 ~ 16458209 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other upstream 1629285 14999455 ~ 15297939 (+)
LOC103031769 prps2 other downstream 185364 17119847 ~ 17138973 (+)
LOC111193547 NA other downstream 472112 17406595 ~ 17419138 (+)
G104656 pcdh8 other downstream 1984577 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 2799743 19734226 ~ 19744924 (+)
G105276 NA other downstream 4054790 20989273 ~ 21055483 (+)

Expression


Co-expression Network