G104162


Basic Information

Item Value
gene id G104162
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 17046772 ~ 17047740 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU140739
CTACACATTCTTAATTCTTTGTTATAGTTATTCCACAGCTTTACTCCACTGACCGATAcacatctgttttttatatttgtccTTGCTCTATTCCTTTTAAATTTATCTATTCCCCTTAGTTCATAGTGGTTCTCTTTAGTTTTAAACTTCCCCTGAATACAATTTGGAAGTAATTTATTTTGTGCTTTGTACATTATCTGTGCAATATTAAGGTCAACTAAATCACAGAATTTTAAAGCATGTAATTTAATCAATAATTTGTTGGTTGGTTCGTTGTATTTTGCTTGGTTAATAAGTCTTATAGCTTTCTTCTGTAGTATGGTAATTGGATTTGTATTGGTTTTATATGAGTTTCCCCATATTTCCACACAATAGGTCATATAAGGCAACATAAAAGaacagtacagtaaatatagtgaCTTCTGATTCAAAATATgtttagttttatataatattgcaATGGTTTTGGccagttttgtttttatgtggTTTATGTGCTGTTTCCAACATAATTTATGATCAATTATCACACCCAgacatttattttcatacacTCTTTCAATGTTAATATCATTGATCATAATTTTTACTtccttctttatttttctattgcCAAAGATCATAAACTTTGTTTTCCTTAAATTTAATGATAGCTTATTAACATCAAACCACTTCTTTACAATGTTTAATTCTCtttctactgtatttaaaaGCATATCCAAGTTTTCTCCAGAGCAATATAAATTGGTATCATCAGCAAATAAGACAACTTTTAACAATTTAGAGGCCTTACAAATATCGTTTATGtacaaattaaacaattttGGTCCTAAAACTGAGCCTTGTGGCACCCCACATTTAACCTTCAGCATATCTGACttggtattatttatttgaacatATTGGTATCTATTATTAAGATAACCTTTGAGCCATGAGTATGCTATTCCCCTAATACCATATCTCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140739 True 969 lncRNA 0.29 1 17046772 17047740

Neighbor

gene id symbol gene type direction distance location
vangl1 vangl1,LOC107552384,LOC107748077,LOC107588836 coding upstream 26570 16909648 ~ 17020202 (+)
LOC103035380 NA coding upstream 230277 16803908 ~ 16816495 (+)
LOC103036216 NA coding upstream 247882 16790748 ~ 16798890 (+)
LOC111188171 zc3h12c coding upstream 384427 16628689 ~ 16662345 (+)
LOC103036820 NA coding upstream 421188 16611601 ~ 16625584 (+)
poglut1 poglut1 coding downstream 1689 17049429 ~ 17060160 (+)
timmdc1 timmdc1 coding downstream 17662 17065402 ~ 17076913 (+)
LOC103032412 gk,LOC107742635,LOC107700103,LOC107667651 coding downstream 33461 17081201 ~ 17109560 (+)
LOC103032094 NA coding downstream 65570 17113310 ~ 17117221 (+)
chst10 chst10 coding downstream 94793 17142533 ~ 17149608 (+)
G104151 NA non-coding upstream 112289 16927224 ~ 16934483 (+)
G104144 NA non-coding upstream 185570 16860988 ~ 16861202 (+)
G104082 LOC107662997,LOC107757412,LOC108434698,LOC107707084 non-coding upstream 359399 16682740 ~ 16687373 (+)
G104001 NA non-coding upstream 500762 16544256 ~ 16546010 (+)
LOC111193544 NA non-coding upstream 609140 16433809 ~ 16437632 (+)
G104177 NA non-coding downstream 134556 17182296 ~ 17182538 (+)
G104183 LOC103030517,LOC108434725,LOC100705727,LOC101474240,LOC102192248,LOC103374257,LOC106510766 non-coding downstream 306689 17354429 ~ 17356491 (+)
G104190 NA non-coding downstream 434384 17482124 ~ 17485186 (+)
G104196 NA non-coding downstream 549408 17597148 ~ 17597444 (+)
G104204 NA non-coding downstream 653947 17701687 ~ 17701919 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 152180 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 472339 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 538985 16463938 ~ 16507787 (+)
G104000 NA other upstream 588563 16451175 ~ 16458209 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other upstream 1748833 14999455 ~ 15297939 (+)
LOC103031769 prps2 other downstream 72107 17119847 ~ 17138973 (+)
LOC111193547 NA other downstream 358855 17406595 ~ 17419138 (+)
G104656 pcdh8 other downstream 1871320 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 2686486 19734226 ~ 19744924 (+)
G105276 NA other downstream 3941533 20989273 ~ 21055483 (+)

Expression


Co-expression Network