G104183 (LOC103030517,LOC108434725,LOC100705727,LOC101474240,LOC102192248,LOC103374257,LOC106510766)


Basic Information

Item Value
gene id G104183
gene name LOC103030517,LOC108434725,LOC100705727,LOC101474240,LOC102192248,LOC103374257,LOC106510766
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 17354429 ~ 17356491 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU140779
gggaaaAAACAGCTTATCAGCAGCTTACATCGTACACAGTATAAATTACATTTCAGAACATTGTTATTAACAGTGGATCTGgaaacaaaatcagaaaaatccACGTAATCACAGGCACAGTTGCATGTGGTAAAACATCCACCACatcataaaatatcataaaatataccattttacatataaataacaaatatacagAACAGAGCATGTTATATTCTGGCAGTCTGACATGAAAATAAGGCATAGTCCAGTACAACTTTAAATTCTCGCCTGCATACGTCTGAAACAAAACAGAGGAAAATAACGCTTTTAACAAGTTTTCCCAAAGAAAGTTTACAGTTTTCTACCTGTACATTTTTCAATGACAAGAATCCACCATTTATAGAAATGtgtaattcaattaaaaaaacagtctgtATAAGTGGAACCCTAGAATTTTCTGCTTTTAGATGgatattttaacaaataaaaaactaaaatattctctgataaaaaaaaatattttttttaacagtgcagtatttgggaaaattaaaaccAGTAAAAGAAACTGTCCACTCCTGCTTCAGAGAacagaaaatattatttaatgtctAAATTAAATACACGTTATAAAGAGGAATTAATCTCGCCATTGTCTGTCTGATATTAAGATTTTTATGAACcataaaaatacaaagaaaaaacgaaatataacaaaataatgaaatgaaaCCTGCTACTCGTTGCACTGCCAAATGACCTGTTTGTGGCTGTAACAGTTGCATTATTAATGTGCAGTTGCATGTCTGTATGTTTTAATTTCTCCTGCTAGTGTCTTTTATAAGTCTCATATACATGTCTCATAAGTCTACAAATTGTAATATATGTAGAATTGTTAAATTGTTATTAAAAGGCAAGGCAAAGTCCAAGTGTAATTTTAATTGCTGGAAATCAGTGCActcataaaaataaaggtggCAAAATGGGTTATTTAGACtgtaaaaaAACCTCAACACATAGGATGCTAAATTCTGATCCTGGAGGTCTTCCATGTTGTAGGTTTAATCTGAACGTAACTTTTAGAGACCTTAtcaaggtatttttttttattaaaaatggagACTTTTCTTATcgtgtttttgaaaatatttcTTCATGGaaattagggctgcatgataatGGAAAAATGTTGCTGCTCTgcgatatatatcgcaatattaaaaaatccaTGAAAGATCAAACACAATCGTGCAAATTTGGTGCACATATTGTGATGACAATACCGAAACGATATATTGTGCTGCCCTAATAGAAATGATACAGTTAACAGTGTATAACTACACATCCAGGCCAAGAACCATGTACGAACCTTTATTTTTCAGAGTGCAGCTTATCTGATTActaatataatcaatattatcAGCTCTAGACTTATTAAAAAAGTCTTCATTCCCAGCCAAAATCCTGACCCGTCATCTGATAGAACTTCAGATTGAAGGGTCTGTAGAAGTCTCTGAGTCTAAGCAACACTTCCGACGGTATCTGAGGATGAGCTCGGCCTTTTGATTTGCCCAGACACCTCGGCCTGCTGCTCCCTTCAGGCTTCTTTAGGCAGGGAAAGCCTTTAGTCTGGTTGAAGTAGAAGTGCTTGTTGGTGACAACCCTCTTCAACCCCAGAAAGTCCTGCACTCTGCCCATCTCCCCCGCCGGGTCCGTCACCAGCCTCTCCCCGCTCACGAAGAGCAGCCGCGAGAGAGGAAAGTACCGGAGCCAGTTCTCCAGGTGCTTGGCGTAGATGCCGATCCGCACGGCGCTCCACGACGTGTCGATCAGGCCCATGGTGGAGTTTTTGAAGACCAGGCTCTGAAAGGAAGGCAGTCCCGGGTTTTTAGACAGAGTCTGAGTGTAGTCTGAAACAGCCCGGGTTACGGGATCTCGCACCACCACGATGAGTTTGGTGTGGCGGCTCATGGCGAAGACGCGGCCAGGGGCTTCTCGTGTCACAAAGTAGCTGGGGGTCTTCTCCATGGTGATCTGACCCTCCAGGGTACGGGGC

Function

NR:

description
heparan sulfate glucosamine 3-O-sulfotransferase 3B1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140779 True 2038 lncRNA 0.39 2 17354429 17356491

Neighbor

gene id symbol gene type direction distance location
LOC103030825 NA coding upstream 29063 17322245 ~ 17325366 (+)
map4k4 map4k4,LOC108258915,LOC106574534,LOC106575325,LOC107668172,LOC107588849,LOC107707082 coding upstream 37226 17213834 ~ 17317203 (+)
lonrf2 lonrf2 coding upstream 154814 17183013 ~ 17199615 (+)
chst10 chst10 coding upstream 204821 17142533 ~ 17149608 (+)
LOC103032094 NA coding upstream 237208 17113310 ~ 17117221 (+)
LOC103032976 si:dkey-1h24.2,LOC108434752,LOC108258345,LOC107707829,LOC560392 coding downstream 68452 17424943 ~ 17473397 (+)
ing1 ing1 coding downstream 536270 17892761 ~ 17896437 (+)
hsf2bp LOC106595116 coding downstream 578368 17934859 ~ 17944725 (+)
LOC103027494 NA coding downstream 593530 17950021 ~ 17962718 (+)
gemin8 gemin8 coding downstream 641824 17998315 ~ 18006511 (+)
G104177 NA non-coding upstream 171891 17182296 ~ 17182538 (+)
G104162 NA non-coding upstream 306689 17046772 ~ 17047740 (+)
G104151 NA non-coding upstream 419946 16927224 ~ 16934483 (+)
G104144 NA non-coding upstream 493227 16860988 ~ 16861202 (+)
G104082 LOC107662997,LOC107757412,LOC108434698,LOC107707084 non-coding upstream 667056 16682740 ~ 16687373 (+)
G104190 NA non-coding downstream 125633 17482124 ~ 17485186 (+)
G104196 NA non-coding downstream 240657 17597148 ~ 17597444 (+)
G104204 NA non-coding downstream 345196 17701687 ~ 17701919 (+)
G104363 NA non-coding downstream 505144 17861635 ~ 17861860 (+)
G104374 ube2a,ube2al,LOC107702882,LOC103029486,LOC107552373,LOC108266561,LOC103021436,LOC108259060,LOC107588833,LOC105934920 non-coding downstream 540178 17896669 ~ 17965475 (+)
LOC103031769 prps2 other upstream 215456 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 459837 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 779996 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 846642 16463938 ~ 16507787 (+)
G104000 NA other upstream 896220 16451175 ~ 16458209 (+)
LOC111193547 NA other downstream 50104 17406595 ~ 17419138 (+)
G104656 pcdh8 other downstream 1562569 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 2377735 19734226 ~ 19744924 (+)
G105276 NA other downstream 3632782 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 3662547 21019038 ~ 21028990 (+)

Expression


Co-expression Network