G104378


Basic Information

Item Value
gene id G104378
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 17903955 ~ 17905999 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU141016
caaagGAATCAGTCATATCCAAAACACAAATACTTCTGTACAGTCAGAATCCATTTGTACACAAATCCATTCAACTGAGCTTCTTACAAAACATGAAACAAGGAACAGAAGACAAACACAAAAGTTGCATACAAAACTTTCCATAACAATAGTGCCAAgctacatagaaaaaaaaaaaaaaaacaacatatattgGCACCAAGCCTTAGAATTGAACAGAAACAGTAGATGCAAAAGTCAGTCATCAAAATCATCATACAAAGAAAATGCACATTGACCACACCATCACTTAGAACACATCATCCAGGCTAGGCTAGCtcacaaacataaaataaagtattcagAAAAGCctgatacaaaatacaaaatcataGTCCCCTTTGGTACAAGGAACGGGATTCCCTCttaaattgtaaaaacaaaaacaaacaccacTTCTCACTGTGGCCTGTGATAAGGTGCAAGAGCATCGTCAAGGAAAACAACTCGGGTTTAAGGCGGCTGGTGGATTGAACACGCAACCACTTGCGAACAGAAGGACAAACGGACAGACTGATTGATTCCAGCTGGACGGCAGATTCCCTTCATGAGCCGTGAAACATCTGCATGGCACTCAACACCTCTCGATCGTAGTGCTGCTCGACCCTTACGGTTGTATTGTGATCATGGCGGTTGTCGGCATCCTCCAGGTCCTCCGCCGTGTCTCCGAAGCCATGGTAATACCCGTAGTGCAGGTGCTCGCTGGAGTCCGAGGGGAACCTGCCCCAGGACGGCCTGTAGGATACGCAGCTGCTAGGGCTGGCGGTGAGGTGCAGCGAGCCACACATGTCGCTTCTAGTCTCCGCATGATCAGGTTCGGTTCGGGCCGGGTGGCAGAGCCCGTTTGATGAGAAGCTGTTGACATCATTGTTGTTCTGTTGCACATGACCGTTCCTCAGATTTGTGGCTGTGTCTATGCTGCCATctgattggctgtctgAAGCAGGTTCCACAGCCATGCtctccacctcctctgctgaCCCATTTAATGTCTTCAATGGAAAATCCATGCCTGAATGga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141016 True 1060 lncRNA 0.46 2 17903955 17905999

Neighbor

gene id symbol gene type direction distance location
ing1 ing1 coding upstream 7518 17892761 ~ 17896437 (+)
LOC103032976 si:dkey-1h24.2,LOC108434752,LOC108258345,LOC107707829,LOC560392 coding upstream 430558 17424943 ~ 17473397 (+)
LOC103030825 NA coding upstream 578589 17322245 ~ 17325366 (+)
map4k4 map4k4,LOC108258915,LOC106574534,LOC106575325,LOC107668172,LOC107588849,LOC107707082 coding upstream 586752 17213834 ~ 17317203 (+)
lonrf2 lonrf2 coding upstream 704340 17183013 ~ 17199615 (+)
hsf2bp LOC106595116 coding downstream 28860 17934859 ~ 17944725 (+)
LOC103027494 NA coding downstream 44022 17950021 ~ 17962718 (+)
gemin8 gemin8 coding downstream 92316 17998315 ~ 18006511 (+)
LOC103032361 gpm6ba,LOC108434682,LOC108259029,LOC107552377,LOC107588840,LOC107654257,LOC107667658 coding downstream 103303 18009302 ~ 18082462 (+)
LOC103032036 LOC108258971,LOC108434686,LOC107588835,LOC107667659,LOC107742634,LOC107739811,LOC107700106,LOC107552381 coding downstream 286699 18192698 ~ 18214872 (+)
G104363 NA non-coding upstream 42095 17861635 ~ 17861860 (+)
G104204 NA non-coding upstream 202036 17701687 ~ 17701919 (+)
G104196 NA non-coding upstream 306511 17597148 ~ 17597444 (+)
G104190 NA non-coding upstream 418769 17482124 ~ 17485186 (+)
G104183 LOC103030517,LOC108434725,LOC100705727,LOC101474240,LOC102192248,LOC103374257,LOC106510766 non-coding upstream 547464 17354429 ~ 17356491 (+)
G104383 NA non-coding downstream 18951 17924950 ~ 17992449 (+)
G104392 NA non-coding downstream 64935 17970934 ~ 17992147 (+)
G104396 cbs,LOC107715910,LOC106593678,LOC107557921,LOC106562750 non-coding downstream 71297 17977296 ~ 17982804 (+)
G104445 NA non-coding downstream 188044 18094043 ~ 18095156 (+)
G104448 NA non-coding downstream 264547 18170546 ~ 18170758 (+)
LOC111193547 NA other upstream 484817 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 764982 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 1009363 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 1329522 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 1396168 16463938 ~ 16507787 (+)
G104656 pcdh8 other downstream 1013061 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 1828227 19734226 ~ 19744924 (+)
G105276 NA other downstream 3083274 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 3113039 21019038 ~ 21028990 (+)
G105357 NA other downstream 3421193 21327192 ~ 21369204 (+)

Expression


Co-expression Network