G104396 (cbs,LOC107715910,LOC106593678,LOC107557921,LOC106562750)


Basic Information

Item Value
gene id G104396
gene name cbs,LOC107715910,LOC106593678,LOC107557921,LOC106562750
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 17977296 ~ 17982804 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU141037
CCCTCGTCTCTGATGAGCATGCGAGCCATAGCAAAGGACTCTTCATCATTGGTCTTGTACCAGCTGTCTACAACTGTTCTGTCCAGTACAGTAGGGATGAAATCATAGCCGATGCCCTCCACCTCATACTGTGTCTTATCTGTCTGGTTCAGCTCCTCCGGCTCAGCTAGAATCGATCCCTCTGGGTCCACAGCAATCTTAATGTTGGGGCATTTCTCCTTCAGCTTGCGAGCGATGCCGGTGATGGTGCCCCCTGTGCCAGCTCCTGCCACCAGCATGTCCACTTTTCCacaacatgtgatattttaaacacaatttaactTCCATGTTATAAAGCTTACATAACTTCCATGTTATAAATACCTCTTTGCCACATATGACCCTGAAGAATGTAATCATAATCATGTTTAACCCTAGAATTAAGTTCTAAACATGAATACTTTAGTGAAGACGGAAGGCTAGGGGTTAAATATGTTGtacagaaagtgagagagagacagagataaagattgagATGATTATATCAATGCTACAGTAAGTCCTAACCATCACACTGCTCCAGGATCTCCTCAGCGGTGGTGTCGTAGTGAGCCAGAGGGTTGCTGGGATTACGATACTGGTCCAGGATGTGTGAGTTGGGAATTTCGTTCTTCAGGCGCCAGGCCACGCCCACATGGGACTCGGGCGAATCGAAACGGGCGCTGGTAGGGGTACGGACGATCTCAGCCCCCAGGGCTCTCAGTACATCCACC

Function

symbol description
cbs Enables several functions, including S-adenosyl-L-methionine binding activity; cystathionine beta-synthase activity; and heme binding activity. Involved in DNA protection; alpha-amino acid metabolic process; and hydrogen sulfide biosynthetic process. Located in cytoplasm and nucleus. Implicated in coronary artery disease; homocystinuria; hyperhomocysteinemia; malaria; and neural tube defect.

NR:

description
PREDICTED: cystathionine beta-synthase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141037 True 752 lncRNA 0.48 4 17977296 17982804

Neighbor

gene id symbol gene type direction distance location
LOC103027494 NA coding upstream 14578 17950021 ~ 17962718 (+)
hsf2bp LOC106595116 coding upstream 32571 17934859 ~ 17944725 (+)
ing1 ing1 coding upstream 80859 17892761 ~ 17896437 (+)
LOC103032976 si:dkey-1h24.2,LOC108434752,LOC108258345,LOC107707829,LOC560392 coding upstream 503899 17424943 ~ 17473397 (+)
LOC103030825 NA coding upstream 651930 17322245 ~ 17325366 (+)
gemin8 gemin8 coding downstream 15511 17998315 ~ 18006511 (+)
LOC103032361 gpm6ba,LOC108434682,LOC108259029,LOC107552377,LOC107588840,LOC107654257,LOC107667658 coding downstream 26498 18009302 ~ 18082462 (+)
LOC103032036 LOC108258971,LOC108434686,LOC107588835,LOC107667659,LOC107742634,LOC107739811,LOC107700106,LOC107552381 coding downstream 209894 18192698 ~ 18214872 (+)
LOC111193482 NA coding downstream 353341 18336145 ~ 18337262 (+)
arhgap6 arhgap6 coding downstream 421702 18404506 ~ 18566714 (+)
G104374 ube2a,ube2al,LOC107702882,LOC103029486,LOC107552373,LOC108266561,LOC103021436,LOC108259060,LOC107588833,LOC105934920 non-coding upstream 11821 17896669 ~ 17965475 (+)
G104378 NA non-coding upstream 71297 17903955 ~ 17905999 (+)
G104363 NA non-coding upstream 115436 17861635 ~ 17861860 (+)
G104204 NA non-coding upstream 275377 17701687 ~ 17701919 (+)
G104196 NA non-coding upstream 379852 17597148 ~ 17597444 (+)
G104445 NA non-coding downstream 111239 18094043 ~ 18095156 (+)
G104448 NA non-coding downstream 187742 18170546 ~ 18170758 (+)
G104446 NA non-coding downstream 205906 18188710 ~ 18191210 (+)
G104474 NA non-coding downstream 232292 18215096 ~ 18215471 (+)
G104478 NA non-coding downstream 232802 18215606 ~ 18216090 (+)
LOC111193547 NA other upstream 558158 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 838323 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 1082704 16888386 ~ 16894592 (+)
LOC103037450 NA other upstream 1402863 16555694 ~ 16574433 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other upstream 1469509 16463938 ~ 16507787 (+)
G104656 pcdh8 other downstream 936256 18919060 ~ 18923203 (+)
nfkbiz nfkbiz other downstream 1751422 19734226 ~ 19744924 (+)
G105276 NA other downstream 3006469 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 3036234 21019038 ~ 21028990 (+)
G105357 NA other downstream 3344388 21327192 ~ 21369204 (+)

Expression


Co-expression Network